Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00387 ATGAAATCAGGTTTCAAAAATGGTTGGCCCTCTGTTGTGCGTCTTCGTCTTAGAGACAAATCAGTGACCCCCTTCTGCATATTCTCTAAAGTGAAATCAGCCGGCAACATACCAGGGAATACACCTGTCTATCTCAATGTCTATGACTTGACAACAGTAAATGGTTATATGTATTGGGCTGGCCTTGGTATTTTCCACTCTGGTGTTGAAGTTTATGGAGTAGAATATGCATTTGGAGCCCATGACTATCCAACAAGTGGTGTCTTTGAGGTTGAACCTCGGCAATGTCCTGGCTTTAAGTTTAGGAAGTCCATATTCATGGGAACTACTAATTTAGATCCCTTCCAGATTAGAGAGTTCATGGAACGTCAGTCTGCAAATTACAATGGTGATACTTATCATTTGATTGTCAAGAATTGCAACCATTTCTGTGAGGATATTTGTTACAAGCTAACAGGAAATTCTATACCAAAATGGGTCAATCGTCTGGCAAGAATAGGCTCCTTCTGCAACTGCATACTCCCTGATGCTCTTAAAACTTCCACTGTTGAGCATGATCCAAACTTTCAAGGGTGTGATAGTGAGAAAAGAAGACTGAGAACTGCTTTCAGTTGCTTGTCATCAATCTCAATGCCTCATAAGGAAGTTTCAATGTCTTCATTATTTATGCACTCTCACTATAAAGGGTGCCTGCCACCATGGGAGTTAAAGAAGTCTAAAAAGGGAAGACTAAAGCAAAAGTTAGAAGACCAGTTCACTTCTCAGTAA 768 0.4036 MKSGFKNGWPSVVRLRLRDKSVTPFCIFSKVKSAGNIPGNTPVYLNVYDLTTVNGYMYWAGLGIFHSGVEVYGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRKSIFMGTTNLDPFQIREFMERQSANYNGDTYHLIVKNCNHFCEDICYKLTGNSIPKWVNRLARIGSFCNCILPDALKTSTVEHDPNFQGCDSEKRRLRTAFSCLSSISMPHKEVSMSSLFMHSHYKGCLPPWELKKSKKGRLKQKLEDQFTSQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00387 255 PANTHER DESUMOYLATING ISOPEPTIDASE 39 226 IPR008580 GO:0008233
Vimu7g00387 255 Gene3D PPPDE domains 37 189 IPR042266 -
Vimu7g00387 255 SMART DUF862_2a 41 179 IPR008580 GO:0008233
Vimu7g00387 255 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233
Vimu7g00387 255 Pfam PPPDE putative peptidase domain 42 177 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00387 Vimu-Chr7 4321045 4325851 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00387 - - vra:106777543 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00387 7 4321045 4325851 Vimu7g00387 7 4321045 4325851 ECH