Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00372 ATGGGTCCTCTAACACCCACACCCATGATGGACATCATCAATGATCTCATTGAAGAGGCCAAGCTCCGTCTTCTCTGGTGGGCTCTTTGTATATTCGCCATTTCCTATTTCTTCACTCATACAAGTAAATCTATGTGGATGAATCTTCCCATGTCCATTCTGTTTGTTGCTTCTCTGCGCATTCTTTTGAACAAGGTGGAATTCCGTTGGAAGGTTCAGCCACCAAGATTACAAACTTATTTATCTCATTTGGAGAAAAATCAGCTGCCTCTGAATGATGAACGACTCTCTTCTTCACCTCCCCCTCCCAAATGGAAGAAGATTGACTCTCCTGTTGTGGAGGCTGCCTTGAATGATTTCATTGATCTGATTTTGAAGGATTTCGTGATAAATATGTGGTATTCAGACCTTACTCCAGATATGGAGTTTCCTGAGCTGATACGAGACTTAATCATGGACGCTATTTCTGAAGTGTCAGTGAGGGTTAAAGAGATAAACCTTGTTGACTTGCTCATGAGGGACATAGTTGATTTAATAGGGGATCATATAGACCTTTTCAGAAGAAATCAAGATGCTATAGGTGTTGATGTCATGTTAACCTTATCTTCTGAGGAGAGGGATGAAAGATTGAAGTTTCATCTGTTGAATTCTAAGGAGCTTCATCCAGCTCTAATATCTCCAGAGAGTGAGTACAAGGTTCTCCAGAGGCTAACGAGTGGATTATTAGCTACGGTACTGAGAAAACGAGAAGTTCAGTGTCCTGTCATTCGATGTATAGCTCGGGAACTTTTAACTTGTTTGATATTGCAACCTATCATGAACTTGGCAAGTCCTGCGTATATCAATGAGCTGATTGAATCCCTTCTACTTGTCCTTAATGATGATGGTATAAATTGGATGGGGGTATGTGAACATTCAACCAATACAACTCATAATCATGGCCATTCTGGTACTGGGGGTGGACATGATAATCAGACAGCCTCTGCTGATTGGGCACAAATGCTGGAGGCTGCAACTCAGAGAAGAACTGAAGTTCTTATGCCTGAGAATCTGGAGAACATGTGGGCAAGAGGAAGGAATTATAGACGAAAACAGCATAAAAGTACCAAAACCGGTTCTCAGGACCCTTCTGTGAAATTTCCTGCTATTGATGCAATTCCAGAAGGAATGTGTGCAATGCATTATGTGGGTTCAGATCCACACCTAAATGTTGTAGGCACAAATAGGTCAGAGTCTTCACCAGATCCTGACAAGGAACTCTGTTCTGAAGTGGACCATCATGTTGATGAGGGGAAGGATATCAGGGATATCCCTTCTAAAAAATATAAAGATCTAAAGAGATCCAACAGTGCTTCTCTCCTGGGAAATCAACCTCTTCTTAAGGTATGCTCCCCAAGGTCAGAGGTCCACAACCCTGAATCCGAGAAACATGGTGAGGGATATAGGGGAAAGAGTGGTTCTGAAATGGTTGTGAGAAGAGACGGACATTTTCTTCCAAAACTTCGGTGCCGGGTTATGGGAGCATATTTTGAGAAACTAGGATCCACTTCTTTTGCTGTATATTCAATTGCAGTGACTGATGGTCTAGAGAAAACTTGGTTTGTTAGAAGAAGATATCGGAATTTTGAGCGATTGCATCGACATCTAAAAGATATTCCCAATTATTTGCTACATTTGCCTCCTAAAAGGATATTTTCCTCAAGCATAGACGATGCATTTGTCTATCAGCGTTGCATTCAGTTTGATAAATATCTCCAGGATCTCCTATCAATACCTAATATTGCTGAACAACATGAGGTGTGGGACTTTTTGAGTGTTTCCTCAAAGAACTACTCCTTTGGGAAATCTTCTTCAATGATGAGGACCCTGGCAGGAATTTTACGCATTGTTACAAGCTTTATTCCAGTTTTTTCTGTTATTAGTAAATTTGTTCCTGCCATAATGCTCAATTTTTTTATACTGGCAGTTAATGTAGATGATGCTGTGGATGATATTGTACGGCAGTTTAAAGGTGTTTCAGATGGTTTAATTCGAAAAGTTGTTGGTTCATCATCCCCTACTACTGATGTTTCTTCCCCGTCAACCAATCAAAACGTGTCCTGGAGCATGGATGAGATGGATAAAAGTGTTCCAAGGCAGACTACTGCAGAGTCCGCGTTAAGCTCTGATAATGAGGAAGGTGAAAAGGAAGCTAATTTTGGTCATGAAAATATTGATAAAGAAGCAGAAGATAATGAGTGGAATTCTGACAATGAATTTAGCTTAAAGGAAGATACACAACTGCTAACAAACCATGGTAATGAATGTACTAACTTGGATCTAGATAGAAAACATGATGTAGCAATGGAAGCTAAGGTTGGAAAGGATGTTCCAGCTACAACTTTCAATCCATTTCCTGATAATATGGAGGATCCAGTTGGAGTTCCACCTGAGGTCTGTAGTCAGCTGGGATTGATCTCCTTTTTGTTTTGCATATCACACTTGTTGATTGAGATATTTGGTTTGCGGTTACTTATTGATGCATGTTTAAGTTATGCATTTGCTGCTTATTCTCTTTGGGACCATGCCTACATGGTAAAGTTGGGGGGTAACCTTTATATTAATGATTATAGTGAAAACTGTACAACATTACTGTACAAGTGTTGGTCTTTATCTTCCTTTAAGGGAAAAAGAAGGAGAATGACTCCTTCTTCCAATAATACAGGAAGAATAAAAAAAGAATCTGTTTTTGCTTTCATCATAATATTTGTTTTCCTTGCTAATTTTGCTTTCTTCTCCACAAGATGGACCCCACCTAATGTGACTGTCCCTATTTTGAATTTGGTTGACAATGTATTTCAGCTTAAGAAAAGAGGCTGGTTAAGGTATAGTAATCTTTCTGGTCTTCCTATATTTCCAAGCTATCCTTTGTGCCCACGGAAGTCCACTACCACTTTGGTAGGCTTTGGCTCAACCCAAATTTATATAGTTCAGGCAAAGTCTGCCTTAGTCTACCTAACACCGGGTCTGGCCATGAGAATGAGAAGGGGCAACCAGGATGCTAGGTTACTACTGCTAGTTGCCCTTTCTGTTGATGCAGAAGACAGAGAGGACACCATTGCCCAAGGGATTCGGTGGGTCCAAGATATCCTCTGGCCTGGTGGCACTTTTTTTTTAAGAATACAGACCCCTCAGGTGTTCATTGGTGGCAGTGCATATGATCAAAAGCCTTTACCAAGCATAAGTGAATCTGGCGGAAGCAAGATGACCAAATCACAGTCAGGATCTTTTGAGCTACAGCTTGAGGCTATTCGTAGAGCAAGTGATTTGAAGAAACTTCTCTTTGATGGAGCTCCAGCAGCTTTAGTTGGCTTAATTGGTCAGAAGCAGTACAAACGTTGTGCCAGTGATATATATTACTTTACTCAGTCTTCTATATGTGTGAAGCAACTTGCTTATGCAATACTTGAACTTCTACTTATTTCCATCTTTCCTGAGTTGCGGAGTGTTGTCATTAGTGTTCATGAGAACAACCTGTATAGAGTTCCTTAA 3531 0.4044 MGPLTPTPMMDIINDLIEEAKLRLLWWALCIFAISYFFTHTSKSMWMNLPMSILFVASLRILLNKVEFRWKVQPPRLQTYLSHLEKNQLPLNDERLSSSPPPPKWKKIDSPVVEAALNDFIDLILKDFVINMWYSDLTPDMEFPELIRDLIMDAISEVSVRVKEINLVDLLMRDIVDLIGDHIDLFRRNQDAIGVDVMLTLSSEERDERLKFHLLNSKELHPALISPESEYKVLQRLTSGLLATVLRKREVQCPVIRCIARELLTCLILQPIMNLASPAYINELIESLLLVLNDDGINWMGVCEHSTNTTHNHGHSGTGGGHDNQTASADWAQMLEAATQRRTEVLMPENLENMWARGRNYRRKQHKSTKTGSQDPSVKFPAIDAIPEGMCAMHYVGSDPHLNVVGTNRSESSPDPDKELCSEVDHHVDEGKDIRDIPSKKYKDLKRSNSASLLGNQPLLKVCSPRSEVHNPESEKHGEGYRGKSGSEMVVRRDGHFLPKLRCRVMGAYFEKLGSTSFAVYSIAVTDGLEKTWFVRRRYRNFERLHRHLKDIPNYLLHLPPKRIFSSSIDDAFVYQRCIQFDKYLQDLLSIPNIAEQHEVWDFLSVSSKNYSFGKSSSMMRTLAGILRIVTSFIPVFSVISKFVPAIMLNFFILAVNVDDAVDDIVRQFKGVSDGLIRKVVGSSSPTTDVSSPSTNQNVSWSMDEMDKSVPRQTTAESALSSDNEEGEKEANFGHENIDKEAEDNEWNSDNEFSLKEDTQLLTNHGNECTNLDLDRKHDVAMEAKVGKDVPATTFNPFPDNMEDPVGVPPEVCSQLGLISFLFCISHLLIEIFGLRLLIDACLSYAFAAYSLWDHAYMVKLGGNLYINDYSENCTTLLYKCWSLSSFKGKRRRMTPSSNNTGRIKKESVFAFIIIFVFLANFAFFSTRWTPPNVTVPILNLVDNVFQLKKRGWLRYSNLSGLPIFPSYPLCPRKSTTTLVGFGSTQIYIVQAKSALVYLTPGLAMRMRRGNQDARLLLLVALSVDAEDREDTIAQGIRWVQDILWPGGTFFLRIQTPQVFIGGSAYDQKPLPSISESGGSKMTKSQSGSFELQLEAIRRASDLKKLLFDGAPAALVGLIGQKQYKRCASDIYYFTQSSICVKQLAYAILELLLISIFPELRSVVISVHENNLYRVP 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00372 1176 SUPERFAMILY PX domain 501 608 IPR036871 GO:0035091
Vimu7g00372 1176 MobiDBLite consensus disorder prediction 682 721 - -
Vimu7g00372 1176 MobiDBLite consensus disorder prediction 465 485 - -
Vimu7g00372 1176 MobiDBLite consensus disorder prediction 468 485 - -
Vimu7g00372 1176 MobiDBLite consensus disorder prediction 682 748 - -
Vimu7g00372 1176 ProSiteProfiles PXA domain profile. 110 289 IPR003114 -
Vimu7g00372 1176 PANTHER PX SERINE/THREONINE KINASE PXK 106 624 - -
Vimu7g00372 1176 ProSiteProfiles PX domain profile. 499 611 IPR001683 GO:0035091
Vimu7g00372 1176 MobiDBLite consensus disorder prediction 722 748 - -
Vimu7g00372 1176 SMART PX_2 498 607 IPR001683 GO:0035091
Vimu7g00372 1176 SMART PXA_3 110 293 IPR003114 -
Vimu7g00372 1176 Pfam PXA domain 110 288 IPR003114 -
Vimu7g00372 1176 Pfam PX domain 530 606 IPR001683 GO:0035091
Vimu7g00372 1176 Pfam Sorting nexin C terminal 1029 1138 IPR013937 -
Vimu7g00372 1176 CDD PX_SNX19_like_plant 501 605 - -
Vimu7g00372 1176 Gene3D - 503 616 IPR036871 GO:0035091
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00372 Vimu-Chr7 4204584 4220884 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00372 K17925 - gmx:100804013 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00372 7 4204584 4220884 Vimu7g00372 7 4204584 4220884 ECH