Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00358 ATGGGAGAGATAGATGAAGCTTTCATTCAAACAGAAGAGAACAGGGCAAAGGTTTGTATGATTGAAGAGGGAATCCCTGTGATAGATCTCTCCCCTTTGGTGTGTGGATCTTCTTCTGAGGTTTGTTTTGAAGAGGTTGTGAGGGAAATAGGCAGTGCATGCAGAGAGTGGGGGTTCTTCCAAGTGATCAACCATGGAAGCTCAGTTGAGAGCAGGCAGAAGATGGAAAGAGAAGCAAGGAAGTTCTTTGAGCAAAGCAAGGAGCAGAAGAATGAAGTGAGAAGAGATGGTGTTCATGTTATAGGCTACTTTGACTCTGAGCTTACCAGAAATGTTAGAGATTGGAAAGAAGTATTTGATTACACTATAGAAGAACCTACCTTGGTTCCTGCTTCGCCTGATCCTCATGATCTCACAATCACTCATTGGTATAACAAGTGGCCCCAATACCCACCACATTTAAGAGAGGCATTGGAAGAGTACAGTAAGGAGATGGAAGAGCTGGCACTGAAGCTAATGGAGCTTATTGCATTGAGCTTAGGTTTGGAACCGAAACGTTTTCATGGTTTCTTCAAAGACCAAACAAGTTGGATAAGGTTGAATTTTTATCCACCTTGTCCTTCACCTGACCTTGTTTTGGGATGTGGTCGTCACAAGGATAGTGGTGCTTTGACAGTGCTTGCTCAAGATGATGTTTGTGGTTTAGAAGTAAAGAGAAAATCTGATGGCCAATGGGTTAGGGTCATACCAGCACCTAATGCTTATATCATCAATGTTGGAGCTGTAATCGAGATTATTATTTTGCAGGTTTGGAGCAATGAAACTTATGAGAGTGTTGAGCATAGGGTTATATTGAATAGTGAGAAGGAAAGGCTCTCATATCCATTCTTTCTCACTCCTGCACATTACACCATGGTGCAGCCTTTGGAAGAGCTGCTAAATAACCAAAACCCTCCCAAATATAGGCCCTACAATTGGGGCAAGTTCTTTGTTACAAGGAAACGTAGTAATTTCGTCAATCTTAATGTACAAAACATTCAAATATATGATTTCAAGATTAATTAG 1065 0.4122 MGEIDEAFIQTEENRAKVCMIEEGIPVIDLSPLVCGSSSEVCFEEVVREIGSACREWGFFQVINHGSSVESRQKMEREARKFFEQSKEQKNEVRRDGVHVIGYFDSELTRNVRDWKEVFDYTIEEPTLVPASPDPHDLTITHWYNKWPQYPPHLREALEEYSKEMEELALKLMELIALSLGLEPKRFHGFFKDQTSWIRLNFYPPCPSPDLVLGCGRHKDSGALTVLAQDDVCGLEVKRKSDGQWVRVIPAPNAYIINVGAVIEIIILQVWSNETYESVEHRVILNSEKERLSYPFFLTPAHYTMVQPLEELLNNQNPPKYRPYNWGKFFVTRKRSNFVNLNVQNIQIYDFKIN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00358 354 PRINTS Isopenicillin N synthase signature 140 156 - -
Vimu7g00358 354 PRINTS Isopenicillin N synthase signature 50 67 - -
Vimu7g00358 354 PRINTS Isopenicillin N synthase signature 288 306 - -
Vimu7g00358 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 300 IPR005123 -
Vimu7g00358 354 Pfam 2OG-Fe(II) oxygenase superfamily 197 300 IPR044861 -
Vimu7g00358 354 Coils Coil 158 178 - -
Vimu7g00358 354 Coils Coil 72 92 - -
Vimu7g00358 354 FunFam Gibberellin 20 oxidase 1 1 339 - -
Vimu7g00358 354 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 25 329 - -
Vimu7g00358 354 Gene3D - 1 338 IPR027443 -
Vimu7g00358 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 25 149 IPR026992 -
Vimu7g00358 354 SUPERFAMILY Clavaminate synthase-like 3 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00358 Vimu-Chr7 4095378 4098818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00358 25 322 Glycosyltransferase AT5G59530 32.476 4.88e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00358 - - qsu:112029575 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00358 7 4095378 4098818 Vimu7g00358 7 4095378 4098818 ECH