Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00344 ATGGTTTTCCCCAAACCTCATCATCACCGTCGTTATTTTTCTTCAACCACTCTGTGTTCATCTTCTTCTTCTTCTTCTTCCAACGACGCACTGGTTGGAGAGAGAGCAATCGCGTACCTTAAACGCCACCCTCAAATGCTGCCATCACTCTCTCATCATTTCACTCCCCAAGCCGCTTCCTACGTTTTACTCCACTCCCAATCCAACCGCGGCATTCTCCTCAAATTCCTCTCGTGGGCCCAAGCCCAAGCCCAGACCCAGGCCCACACTTTCCTCACCCCGCACTGCAAGTGTCTCGCCATTCACATTCTCACCCGCTTCAAGCTCTACAACACTGCGCACTCCCTCGCCGCCACCCTCATCCACCACACTGCCACCGACCTTTTCCGTCACCTTCACGACACTTACTACCTCTGCAACTCCTCCTCCTCCTCCGCCACCGCAGCCGGTGCTTTCGACCTCGTTGTCAAATCCCTCTCCCGCCTCGACTTCCCCGACAAAGGCCTGGCAGTCCTCCACCTTGCCACCCGCCACGGCTTCGCGCTCGCCGTCCTCTCCCACAACGCCATCCTCCATGCGCTCCTCCGCCGCCACCACCACAAAAACTCCCTTCACCAAGCAGAACAACTGTTCCGCGACATGATCCGCAACGGCGTGTCGCCGAACGTGTACACTTACAACATCATGATTCGCGGCGTGGTTGACCGGGCAGACTTGGAGAAGGGGTTCGGGTTCATGCGCGAGATGGAGAGAGAAGGGGTTTCGCCGACTGTGGTTACCTACAACACGCTGATCGACGCTTGCTGCAAGAGGAGGAGGGTGAAGGAGGCGATGGTGCTGCTGAGAGAGATGGCGGCGAGGGGCGTGGTTGCGAATTTGATTTCGTACAATTCGGTGATCAATGGATTGTTTGGTGAGGGGAGAATGAGTGAGGTTGGAGAATTGGTTGAGGAGATGAGTGACAAAGGGTTTGCTCCTGATGAGGTCACTTATAATACTCTTGTTAATGGGTTTTGCAAGGAGGGGAATTTCCACCAGGGGTTTGTGCTGCTTTCGGAGATGGTTGAGAAGGGGTTGTCACCAAATGTTGTTACATACACTACTTTGATCAACTGTATGTGCAAGGCTGGGAATTTGAGTCGAGCGATGGAAATTTTTGATCAGATGCGTGTTAGGGGGCTGAGGCCGAATGAGAGGACTTACACAACCTTGATTGATGGGTTCTGCCGGAAAGGGTTGCTGAATGATGCTTATAGGGTATTGAGTGAGATGATTGTTAGTGGATTTTCGCCGTCGATTGTGACTTACAACGCGCTTGTGCATGGATATTGCTTTCTGGGGAGGGTGGAGGAGGCTGTGGGGATTTTGAAGGGGATGGTTGAGAGGGGGTTGTTTCCTGATGTTGTTAGTTATAGCACTGTTATAGCTGGGTTTTGCAGAGAGCGGGAGCTGGGGAAAGCCTTTCGAATGAAGGAGGAGATGGTTGAGAAGGGTGTTATGCCTGATAGGGTTACATATTCCTCGCTCATACAGGGTCTTTGTCTGCAGCAGAAACTGGTGGAAGCTTTTGATTTGTTCCGAGAGATGCTGCAGATGGATCTCCCGCCTGATGAGGTTACGTACACTAGTTTGATTAATGCTCACTGCGTTGAAGGTGAGTTGAGCAAGGCTCTTCGTTTGCATGATGATATGATGCAGAGGGGTTTTTTGCCGGATGATGTTACCTACAGCGTGCTTATTAATGGACTTAATAAGAAGGCTAGGACGAAGGAAGCAAAGAGGCTCCTTCTGAAGTTGTTTTATGAGGAGTCTGTACCAAATCATGTAACATACAATACACTGATCGAAAACTGCAGTAATAATGAATTTAAGAGCGTGGTAGGTCTTGTGAAAGGATTCTGCATGAAGGGTTTGATGAATGAAGCAGATCAAGTTCTTAAGACAATGCTTCAGAGGAATCATAAGCCTAATGCAGTAATTCATAATTTGATAATACACGGACATTGTAGAAGTGGAAATGTTCACAAGGCATATAAGATGTATACGGAGTTGGAACGTTATGGTTTTGTTTCTCATACAGTGACTGTAATTGCTCTCGTCAAGGCACTATCTAGGAAAGGGATGAATGATGAGCTGAGTCAGGTTTTGCAAAATGTGTTGAAGAGTTGTAAGCTTAATGATGCTGAGGTAGCTAAAGTACTTGTTGAGGTTAACTTCAAAGAAGGTAACATGGACGCTGTTTTGAATGTGCTAACTGAAATGGCCAAGGATGGCCTGCTACCTAACGGTGGGATCCATTCATTTGCTCCGGGAAGTACCTAA 2322 0.4888 MVFPKPHHHRRYFSSTTLCSSSSSSSSNDALVGERAIAYLKRHPQMLPSLSHHFTPQAASYVLLHSQSNRGILLKFLSWAQAQAQTQAHTFLTPHCKCLAIHILTRFKLYNTAHSLAATLIHHTATDLFRHLHDTYYLCNSSSSSATAAGAFDLVVKSLSRLDFPDKGLAVLHLATRHGFALAVLSHNAILHALLRRHHHKNSLHQAEQLFRDMIRNGVSPNVYTYNIMIRGVVDRADLEKGFGFMREMEREGVSPTVVTYNTLIDACCKRRRVKEAMVLLREMAARGVVANLISYNSVINGLFGEGRMSEVGELVEEMSDKGFAPDEVTYNTLVNGFCKEGNFHQGFVLLSEMVEKGLSPNVVTYTTLINCMCKAGNLSRAMEIFDQMRVRGLRPNERTYTTLIDGFCRKGLLNDAYRVLSEMIVSGFSPSIVTYNALVHGYCFLGRVEEAVGILKGMVERGLFPDVVSYSTVIAGFCRERELGKAFRMKEEMVEKGVMPDRVTYSSLIQGLCLQQKLVEAFDLFREMLQMDLPPDEVTYTSLINAHCVEGELSKALRLHDDMMQRGFLPDDVTYSVLINGLNKKARTKEAKRLLLKLFYEESVPNHVTYNTLIENCSNNEFKSVVGLVKGFCMKGLMNEADQVLKTMLQRNHKPNAVIHNLIIHGHCRSGNVHKAYKMYTELERYGFVSHTVTVIALVKALSRKGMNDELSQVLQNVLKSCKLNDAEVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPNGGIHSFAPGST 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00344 773 SUPERFAMILY TPR-like 330 593 IPR011990 GO:0005515
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat 653 683 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat 428 460 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat 253 284 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Vimu7g00344 773 Gene3D Tetratricopeptide repeat domain 149 320 IPR011990 GO:0005515
Vimu7g00344 773 Gene3D Tetratricopeptide repeat domain 391 459 IPR011990 GO:0005515
Vimu7g00344 773 Gene3D Tetratricopeptide repeat domain 533 602 IPR011990 GO:0005515
Vimu7g00344 773 Gene3D Tetratricopeptide repeat domain 321 390 IPR011990 GO:0005515
Vimu7g00344 773 Gene3D Tetratricopeptide repeat domain 460 532 IPR011990 GO:0005515
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat family 537 584 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat family 466 514 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat family 292 340 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat family 186 233 IPR002885 -
Vimu7g00344 773 Pfam PPR repeat family 361 410 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 434 468 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 469 502 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 539 572 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 629 658 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 364 398 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 504 538 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 329 363 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 659 690 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 400 432 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 294 328 IPR002885 -
Vimu7g00344 773 NCBIfam pentatricopeptide repeat 224 258 IPR002885 -
Vimu7g00344 773 Gene3D Tetratricopeptide repeat domain 621 747 IPR011990 GO:0005515
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vimu7g00344 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Vimu7g00344 773 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 518 618 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00344 349 766 Glycosyltransferase AT1G05670 28.469 6.04e-58 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00344 - - gmx:100808787 1179.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00344 7 4002703 4005024 Vimu7g00344 7 4002703 4005024 ECH