Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00168 ATGAAAATTAAAACAAGCATATGTTTTGTTCTGCTCTTGTTATTTTCAGTGTCTTCAGCTGAAGATGTGAATGTTAACGTGAAAGGGGTGACACACATAGCTACCACAGATGAAAATTTCATCTGTGCAACTTTAGATTGGTGGCCACCAAACAAGTGTGACTACGATCAATGTCCCTGGGGAGAAGCAGGAATTATGAATCTGGACTTGTTTAACAACATTCTGATAAATGCCGTTAAGGCTTTTAACCCCCTAAGGATCAGATTAGGAGGTTCACTGGAAGATCAGATTGTATACCAATTTGGAGAACAAGAGGAATGCCCCATTATGGAAAAGCAAAGTGATGGTCTCTTTGGTTTCAGCAAAGGATGCCTTCCCAGAAAGAAATGGGATGAAGTTAATGAATTTCTTAACAAAACTGGGGTGAAATTCACTTTCGGGTTGAATGCCCTAAATGGAAAGGAAAATTCTAAGGAGGACAAGGAAAACTGGGTAGGAGACTGGGACCCAACAAATGCCTTAAGTCTCATGGAGTACTCAATTTCAAAAGGATACAAAATAGATTCATATGAATTAGGAAATGAGTTATGCTCTGGTGGGGTAGCTGCCAAAATAGACAGTGTTCAATATGCTAAAGACATCACTCAACTCAGAAATTTAGTTAATTTGCTATACCAAAATGCCAATACAAGGCCAAAGGTGCTTGGCCCTGCAGGTTTCTACAGTAAGGAATGGTTTGATAGCTTCTTAGAGAATGTTGGACATGGTGTGGTTGATGGAGTGACCCACCACATTTACAACCTTGGTTCTGGTAATGACAAGGATCTTATTAACAAGGTTCAAGACCCATATTATTTGAGCAAAGTTGCTCAAACATTCAAAGATGTTTCAGAATCAGTGAAGGTATTCACTCCAAGGGCAGGAGCATGGGTTGGGGAATCTGGTGGAGCTTATAACAGTGGTGGCAAAGATGTATCAAATACTTTTGTTAATGGCTTTTGGTACTTGGACCAGCTTGGCATGACAGCAGCCTTCAACCACAAGGTTTATTGCAGACAAGCACTAATTGGAGGAAACTACGCTATGCTAAACACCACAACCTTCATTCCTAACCCAGATTATTATGGAGCACTTTTGTGGCATCGGCTTATGGGAAGAAATGTGCTTTCTGTGTCTCATGAAGGATCTTCATTTTTGCGTGCATATGGTCATTGTTCAAAGAAAGGGCATGGCATCACAGTGCTGCTCATAAACATGTCAAATTCCACAACTTTCAGAGTATCTCTGGTGAATGACATGCACACAGATAAAGAAGGAGGATCATCAGACGCAATGAGGGAAGAGTACCATTTGACTCCAAAAGATGGCAACATTCAAAGTGAGGTGGTGCTGTTGAATGGAACTCCATTAAAGCTCACACAGTCGCTAGACATCCCAGAGATGAATCCAAAGCTGGTTGATCCATCTTCCACAATCAAAGTGAAGCCTGATTCCATTGTGTTTGTGCATACCAAGAGTTTCCGTGCACCAGCATGTAGTTAA 1542 0.4099 MKIKTSICFVLLLLFSVSSAEDVNVNVKGVTHIATTDENFICATLDWWPPNKCDYDQCPWGEAGIMNLDLFNNILINAVKAFNPLRIRLGGSLEDQIVYQFGEQEECPIMEKQSDGLFGFSKGCLPRKKWDEVNEFLNKTGVKFTFGLNALNGKENSKEDKENWVGDWDPTNALSLMEYSISKGYKIDSYELGNELCSGGVAAKIDSVQYAKDITQLRNLVNLLYQNANTRPKVLGPAGFYSKEWFDSFLENVGHGVVDGVTHHIYNLGSGNDKDLINKVQDPYYLSKVAQTFKDVSESVKVFTPRAGAWVGESGGAYNSGGKDVSNTFVNGFWYLDQLGMTAAFNHKVYCRQALIGGNYAMLNTTTFIPNPDYYGALLWHRLMGRNVLSVSHEGSSFLRAYGHCSKKGHGITVLLINMSNSTTFRVSLVNDMHTDKEGGSSDAMREEYHLTPKDGNIQSEVVLLNGTPLKLTQSLDIPEMNPKLVDPSSTIKVKPDSIVFVHTKSFRAPACS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00168 513 PANTHER HEPARANASE-RELATED 14 512 - -
Vimu7g00168 513 Gene3D Glycosidases 62 382 - -
Vimu7g00168 513 Pfam Glycosyl hydrolase family 79, N-terminal domain 23 340 IPR005199 GO:0016020|GO:0016798
Vimu7g00168 513 SUPERFAMILY (Trans)glycosidases 36 384 IPR017853 -
Vimu7g00168 513 FunFam heparanase-like protein 3 60 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00168 Vimu-Chr7 2058213 2060481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00168 11 513 Glycoside Hydrolase AT5G61250 50.000 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00168 K07964 - gmx:100804120 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00168 7 2058213 2060481 Vimu7g00168 7 2058213 2060481 ECH