Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00080 ATGGGGAATGCCTTGGCAGGAAAGAAAACGACCAAGGTCATGAAGATCGACGGCCAAACCTTCAAGTTCAAGACTCCGGTCAGAGTCTGCGACGTCCTCAAGGACCACCCGGGCCTTGTGCTGCTGGAATCCGAGGCGGTCAAGCACTACGGCGTCAGGGCCAGGCCGCTCGAGGCCAACCGGGAGTTGGCACCCAAAAGGCTGTACTTTCTCGTGGAGCTGCCGCGCGAGCCGGCGGTGCTGCCACGGAGGGTGCGGTCCGGGATCAACATGAGCGCCAAGGACAGGCTGGAGAGCCTGGTGCTGGCGCGGAGGTCTGCGTCAGACCTCACCATCATGAAAGGGCAGGGAATGGAAGGAACGGAGAATGGCGGAGTACGGCTGAGGATGCGGCTGGCGAAGGCGGAGGTGGAGAGGGCGATGCGTGGGTGCGAAACGGAGGCGGAGGCGGCGGAGAAGATCGTTGGACTCTGCATGGCCAAAAGCGGCGAGGGTTCAAAAGCTCGTCAGAAAAGAGTGAGTTTTATGGCAATCAGTGAAGGAGGGAATCCTATAGGAGTGGCTTCATGA 570 0.6035 MGNALAGKKTTKVMKIDGQTFKFKTPVRVCDVLKDHPGLVLLESEAVKHYGVRARPLEANRELAPKRLYFLVELPREPAVLPRRVRSGINMSAKDRLESLVLARRSASDLTIMKGQGMEGTENGGVRLRMRLAKAEVERAMRGCETEAEAAEKIVGLCMAKSGEGSKARQKRVSFMAISEGGNPIGVAS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00080 189 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 169 - -
Vimu7g00080 189 Pfam PADRE domain 1 172 IPR025322 -
Vimu7g00080 189 Coils Coil 134 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00080 Vimu-Chr7 1022134 1026471 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00080 - - var:108335524 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00080 7 1022134 1026471 Vimu7g00080 7 1022134 1026471 ECH
Vimu7g00080 7 1022134 1026471 Vimu6g01842 6 16635669 16638616 ECH
Vimu7g00080 7 1022134 1026471 Vimu1g01067 1 7933987 7935882 ECH