Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04321 ATGGTGAAGGACAGAAACATTGGTGTTGCATTGGACTTCTCAAAGAGCAGCAAGGTTGCTCTCAAATGGGCGATTGAAAACTTGGCCGATAAAGGCCACACCTTTTACATCATCCATGTCAACCACGATTCCTCTGATGATCGTAACCAGTTGTGGGTCAAATCTGGTTCTCCTCTTATTCCATTAACCGAGTTCAGAGAGGCAGAGGTTCTGAAGAACTATGGCGTACAAAGTGATGCTGAGGTCCTTGATTTGCTTGACACTGCCACCAGACAAAAAGAGGTTAACGTTGTTGTAAAATTGTACTGGGGTGATGTGAGAGAGAAACTTTTGGATTCCATTGAAGATCTGAAGCTGGACTCTTTGGTCATGGGAAGCAGAGGTCTCAGCACAATCCAAAGAATGATACTGGGAAGTGTAAGCAACTTTGTGATGACTCATGCTCCATGCCCAGTGACCATTGTGAAGGAGCATTAG 477 0.4465 MVKDRNIGVALDFSKSSKVALKWAIENLADKGHTFYIIHVNHDSSDDRNQLWVKSGSPLIPLTEFREAEVLKNYGVQSDAEVLDLLDTATRQKEVNVVVKLYWGDVREKLLDSIEDLKLDSLVMGSRGLSTIQRMILGSVSNFVMTHAPCPVTIVKEH 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04321 158 Gene3D HUPs 1 158 IPR014729 -
Vimu6g04321 158 FunFam Universal stress protein family protein 1 158 - -
Vimu6g04321 158 PANTHER IMP2'P 1 157 - -
Vimu6g04321 158 Pfam Universal stress protein family 5 156 IPR006016 -
Vimu6g04321 158 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 157 - -
Vimu6g04321 158 CDD USP_Like 6 155 - -
Vimu6g04321 158 PRINTS Universal stress protein signature 116 128 IPR006015 -
Vimu6g04321 158 PRINTS Universal stress protein signature 4 22 IPR006015 -
Vimu6g04321 158 PRINTS Universal stress protein signature 134 156 IPR006015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04321 Vimu-Chr6 46711132 46712148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04321 6 46 Receptor kinase-like Gene Family AT1G78940 50.000 1.33e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04321 - - gmx:100527197 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04321 6 46711132 46712148 Vimu6g04321 6 46711132 46712148 ECH
Vimu6g04321 6 46711132 46712148 Vimu9g01316 9 21324429 21331797 PCT