Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03845 ACTGAAGAAGAATTGCAGAGGCAGAAGGCAATTGATGATTGGCTTCCAATCACTTCTTCAAGGAATGCAAAATGGTGGTACTCTGCCTTCCACAATGTCACTGCCATGGTTGGGGCTGGTGTTCTTAGTCTCCCCTATGCCATGTCTGAGCTAGGATGGGGTCCTGGTGTAACCGTACTTGTTCTGTCATGGATCATCACCCTTTACACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCTGGAAAACGTTTTGACAGATACCATGAACTAGGGCAGTATGCCTTTGGGGAAAAGCTAGGACTTTATATTGTGGTGCCTCAACAGCTTGTGGTTGAAATTGGGGTGAACATTGTCTATATGGTCACTGGGGGGAAATCCTTGCAGAAATTCCATGACACTGTGTGTGATGACTGCAAAAAGATCAAGTTGACCTTCTTCATTATGATCTTTGCATCTGTTCACTTTGTGCTGTCTCACCTGCCTAACTTCAACTCCATTTCTGGTGTATCTTTGGCAGCAGCAGTTATGTCCTTGAGTTACTCTACCATTGCTTGGACAGCTTCTGCTAACAAGGGTGTTCAAGAAGATGTACAATATGGTTACAAAGCTAAGAGTACAGCGGGAACAGTGTTTAACTTTTTTAGTGCCCTTGGTGATGTTGCTTTTGCCTACGCTGGACACAATGTGGTGTTGGAAATCCAAGCAACAATTCCATCTACTCCAGAGAAACCATCCAAGGGTCCTATGTGGAAAGGAGTGATTGTTGCTTACATAGTTGTGGCTCTGTGCTACTTCCCAGTTGCCCTTGTTGGTTACTGGATGTTTGGCAATGGGGTTCAAGACAACATTCTCATCAGTCTAGAGAAACCAAAATGGCTTATTGCAACGGCTAACATGTTTGTTGTCATACATGTTATTGGAAGTTATCAGATTTATGCAATGCCAGTGTTTGACATGATCGAAACTCTGTTGGTGAAGAAGTTGAACTTCAAACCTAGTAGAGTGCTTCGCTTTATTGTACGCAATTTGTATGTGGCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTTGGTGGTCTCCTAGGATTTTTCGGAGGATTTGCTTTTGCACCTACAACATACTTCCTCCCTTGTATCATGTGGCTTGCAATCTATAAACCAAAGAGATTCAGCTTGTCTTGGTGGACCAACTGGATCTGCATTGTGCTTGGCCTAATGTTGATGATTTTATCACCAATTGGAGGATTGAGGTCAATTATAATTGATGCCAAGAACTACCACTTCTACTCATAA 1302 0.427 TEEELQRQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGVTVLVLSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGLYIVVPQQLVVEIGVNIVYMVTGGKSLQKFHDTVCDDCKKIKLTFFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWTASANKGVQEDVQYGYKAKSTAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVIVAYIVVALCYFPVALVGYWMFGNGVQDNILISLEKPKWLIATANMFVVIHVIGSYQIYAMPVFDMIETLLVKKLNFKPSRVLRFIVRNLYVAFTMFVAITFPFFGGLLGFFGGFAFAPTTYFLPCIMWLAIYKPKRFSLSWWTNWICIVLGLMLMILSPIGGLRSIIIDAKNYHFYS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03845 433 Pfam Transmembrane amino acid transporter protein 22 417 IPR013057 -
Vimu6g03845 433 PANTHER OS05G0424000 PROTEIN-RELATED 23 422 - -
Vimu6g03845 433 FunFam Lysine histidine transporter 1 18 428 - -
Vimu6g03845 433 Gene3D Amino acid/polyamine transporter I 18 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03845 Vimu-Chr6 37329488 37331497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03845 3 433 Organic Solute Cotransporters AT1G48640 80.974 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03845 K26385 - gmx:100791368 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03845 6 37329488 37331497 Vimu6g03845 6 37329488 37331497 ECH