Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03674 ATGAGCAGTTGGAAAAACCTTCTTCTACGAATCGGTGACAAGAGTCCCGAATACGGAGTCTCCTCTGACTATAAAGATCACATTGATACGTGCTTTGGCGCCCTTCGTCGCGAACTTGACCACTCCCATACCGATGTTTTGGAGTTCCTTCTCACGTGTGCTGAGCATTTGCCTCACAAGATTCCTCTGTATGGAACCCTGATTGGCTTGATTAACTTGGAAAATGAGGACTTTGGGAAGCAACTAGTGGAGAAAACTAAAACCATGTTTCAGGATGCCTTGGATACTAAAAACTGCAACGGGGTTCGAGTTCTAATGCGGCTTTTGACTGTTATGATGTGCAGTAAGGTTCTTCAACCGAGCTCCTTGGTGGCTGTCTTTGAAACATTTTTATCCTCAGCTGCCACAACAGTAGATGAGGAAAAAGGCAATCCCTTATGGCAGCCTTGTGCAGACTTTTACATCACTTGCATTTTGTCATGCCTTCCATGGGGCGGAGCAGAACTTACCGAGCAAGTTCCTGAAGATATTGATAGAGTGATGGTCGGTGTAGAAGCTTACTTGAGCATCAGAAAGCATACATCTGATACTGGCTTATCCTTTTTTGAGAATGATGATGAAAATGGGGAAGGTATTAGTGACAAGGATTTTTTAGAAGATTTATGGGATAGAATACAAGTTTTATCAATGAGGGGATGGAAAGTTGAAAGTGTTCCAAGACCTCATCTTTCATTTGAAGCTCAATTGGTTGCTGGGAAGTCTCATGAATTTGGGCCAATAAGCTGCCCCAGCCTACCAGAACCACCTTCAGTCCCTTCTGGCGTGTCTACTGGTAAACAGAAGCATGAAGCAGAATTAAAATATCCTCAAAGGATACACCGGTTAAATATATTTCCTCCCAGTAAACATGAGGATATACAACCTATAGACAGATTTGTTATGGAAGAGTATCTCCTAGATGTGCTTCTGTTCTTCAATGGCTGTCGAAAGGAGTGTGCATCTTTCATGGTTGGTTTGCCTGTTTCCTTCAGATATGAGTACCTCATGGCCGAGACAATATTCTCTCAGTCACCGTGCGTGGTCCTGTTTTGTCCGCGTCGCCATTCACCTGGTTTGCGATCACTTCACAATGGCTGCCGTCGTCGCTGCCATCCTCACCACCTTCCTCGCGTTGCAGCTTCTGGTTTGCCCTTCTTCTTTGAGCCGCAAGTGCTGCTGATGCTACCTCAACCACCTTTCAGACCAGTATATTACACACTTGTAATTATTGACCTTTGCAAGGCTCTTCCTGGAGCTTTTCCTGCTGTTGTTGCTGGAGCAGTTCGTACTCTCTTTGAGAGGATAGCTGATTTGGATATGGAATGTCGAACACGTCTAATCCTTTGGTTCTCCCACCATTTATCAAACTTCCAGTTTATCTGGCCATGGGAAGAGTGGGCTTATGTCCTAGACCTCCCAAAGTGGGCTCCACAACGTGTCTTTGTCCAAGAGGTTTTGGAGAGGGAAGTTCGCTTGTCATACTGGGACAAAGTTAAGCAGAGTATTGAAAATGCACCTCGTTTGGAAGAATTGCTTCCTCCTAAAAGCGGGCCAAATTTTAGTTTTGGTTCAGAAGATGGTAAAGAAAGCAATGAGCATGCACTGTCTGGAAAGCTCAACAGTATGGTTAAAGGGAAGTCACCTGTCCGTGAAATAATCTCTTGGATTGATGAAAGTGTGCTTCCAAATAATGGTCTAGAAGTTACCCTCAGAGTGATTGTACAAACACTTCTCAATATTGGATCCAAGAGTTTCACTCATTTGATAACTGTCTTGGAGAGATATGCACAAGTCTTTGCGAAAGTATGTCCGGATGAGGATCGACAAGTCATGCTGATAGCTGAAGTGAGTTCTTTCTGGAAGAGTAACACCCAAATGACAGCAATAGCTATTGACAGGATGATGGGTTATCGACTTGTATCAAATCTGGCTATTGTGAGATGGGTCTTCTCAGCAGAAAATATTGAGCAATTTCATACATCGGATCGTCCATGGGAGATTCTGAGAAATGCAGTAAGCAAGACACATAATCGTATTTCTGATTTACGGAAAGAAATATTAACTATTAAAAAGAACATTTCATCTGCGGAAGAGGCTGCCAAGGAGGCAAAAGCTGAGCTAGATGCTGCAGAGTCAAAACTTACACTTGTGGATGGTGAACCAGTTCTTGGTGACAATCCTGTTAGATTGAATAGATTGAAATCACATGCTGAAAAGACAACGGAGGACGTGGTGACTGTTAAAGAATCCTTAGAATCTAAGGAAGCTCTTCTTGTCCGAGCAATTGAGGAAAATGAGGCATTATTTCTCTTGTTGTACAAAAGCTTCTCAAATGTGTTGACAGAGCGGCTTCCTGAAGGAACTAGAACACTGCATGAGTTGAAGTCTGTGCAAGTAGATGTGATGGCAGTGGACGCTGAAGAGCCACCAACAATGGAATTAGATGACGAAAACCAGAGATCTCAAAACAGTCAGTCAAATGGAGAGAAGAAAGGTGGTGCTTATGTTGTAGGTGAAAAGGAGCAGTGGTGTATCACCACTTTGGGCTATGTGAAGGCTTTTTCTAGGCAGTATGCTGCTGAGATATGGCCCCATGTTGAAAAGTTGGATGCAGAGGTATTGACAGAAGAAACACCTTATCTTTTTAGGTCAGCTGTTTATACCGGTCTTCGAAGACCAATTCACGAGGCATGA 2733 0.434 MSSWKNLLLRIGDKSPEYGVSSDYKDHIDTCFGALRRELDHSHTDVLEFLLTCAEHLPHKIPLYGTLIGLINLENEDFGKQLVEKTKTMFQDALDTKNCNGVRVLMRLLTVMMCSKVLQPSSLVAVFETFLSSAATTVDEEKGNPLWQPCADFYITCILSCLPWGGAELTEQVPEDIDRVMVGVEAYLSIRKHTSDTGLSFFENDDENGEGISDKDFLEDLWDRIQVLSMRGWKVESVPRPHLSFEAQLVAGKSHEFGPISCPSLPEPPSVPSGVSTGKQKHEAELKYPQRIHRLNIFPPSKHEDIQPIDRFVMEEYLLDVLLFFNGCRKECASFMVGLPVSFRYEYLMAETIFSQSPCVVLFCPRRHSPGLRSLHNGCRRRCHPHHLPRVAASGLPFFFEPQVLLMLPQPPFRPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFERIADLDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPRLEELLPPKSGPNFSFGSEDGKESNEHALSGKLNSMVKGKSPVREIISWIDESVLPNNGLEVTLRVIVQTLLNIGSKSFTHLITVLERYAQVFAKVCPDEDRQVMLIAEVSSFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFSAENIEQFHTSDRPWEILRNAVSKTHNRISDLRKEILTIKKNISSAEEAAKEAKAELDAAESKLTLVDGEPVLGDNPVRLNRLKSHAEKTTEDVVTVKESLESKEALLVRAIEENEALFLLLYKSFSNVLTERLPEGTRTLHELKSVQVDVMAVDAEEPPTMELDDENQRSQNSQSNGEKKGGAYVVGEKEQWCITTLGYVKAFSRQYAAEIWPHVEKLDAEVLTEETPYLFRSAVYTGLRRPIHEA 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03674 910 PANTHER CAP BINDING PROTEIN 405 899 IPR027159 GO:0000339|GO:0005846|GO:0006406
Vimu6g03674 910 Pfam MIF4G like 546 874 IPR015174 GO:0016070
Vimu6g03674 910 SUPERFAMILY ARM repeat 294 356 IPR016024 -
Vimu6g03674 910 Pfam MIF4G like 405 515 IPR015172 GO:0016070
Vimu6g03674 910 MobiDBLite consensus disorder prediction 829 843 - -
Vimu6g03674 910 FunFam Nuclear cap-binding protein subunit 1 3 269 - -
Vimu6g03674 910 Gene3D - 3 269 - -
Vimu6g03674 910 SUPERFAMILY ARM repeat 2 296 IPR016024 -
Vimu6g03674 910 SUPERFAMILY ARM repeat 526 893 IPR016024 -
Vimu6g03674 910 Gene3D - 538 897 - -
Vimu6g03674 910 Coils Coil 692 733 - -
Vimu6g03674 910 Pfam MIF4G domain 21 196 IPR003890 GO:0003723|GO:0005515
Vimu6g03674 910 Gene3D - 299 360 - -
Vimu6g03674 910 Gene3D - 403 529 - -
Vimu6g03674 910 MobiDBLite consensus disorder prediction 821 845 - -
Vimu6g03674 910 SMART if4_15 8 229 IPR003890 GO:0003723|GO:0005515
Vimu6g03674 910 SUPERFAMILY ARM repeat 405 526 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03674 Vimu-Chr6 34500368 34528278 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03674 K12882 - gmx:100811738 1550.03