Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03656 ATGATGAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGATTATGTGGTTTCACACCGTGACCGGAACGCTTTGTCTTTGGATAGAGAGGTGTACGAGGCAGAGGGTGTTCATAGGGAACTGTTACTCTATCTCTCCGGAGAGGTTGATCCAAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTTCCTTACGGGTGGGGTGGTTTTGTGTATCCATGGATTGAGGCTCTGGCCAAGAGCAGAGTTGGGTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACAAACTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCTCCACCGATGGCCTTGCTGCCGTAGCTGCTAATTGCAGTGAGGAATCTTGGAATGTGTTCTTGACTCCCAATATTGCTGGTGTTTTACTTGTTTTGAAATGTAGGTATCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAAGATCACAAAGGGCATTGGCTAAGTTGCTTTCCTGATAGCTGCACATCGCTTGTCTCTCTGAATTTCGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCACTAGAGAGACTTGTAGCCAGGTCTCCTAACCTCAAGAGTTTGAAGCTGAATCGTTCAGTTCCCCTTGATGCCCTGCAAAGGATAATGACACGAGCACCTCAACTAGCGGATTTGGGAATTGGATCATTTGTCCAAGATCCTGAATCAGAGGTATTCATAAAGCTCAAGAACACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCAGGGCTTTTGGAAGTTGCTCCTCACTGTCTTGCTGCGATATATCCCATTTGCCCCAATTTAACATCCTTAAACTTGAGCTATGCAGCAGGCGTTCAGGGCACTGATCTGATAAAACTAATTCGCCACTGTGTGAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTTGGTGTTGTAGCCAAGACATGTACGGATTTGCAAGAACTGAGGGTGTTTCCATCCGTTCCCTTTGGAAATGCATTGGCTGTCACAGAAGTAGGACTTGTTGCAATATCAATGGGGTGCCCCAAGCTTCATTCATTGCTCTACTTCTGCCAACAGATGACAAATGCTGCACTGATTACAGTGGCCAAGAACTGCCCCAATTTCATCCGTTTCAGGTTGTGCATCCTTGATGCAACAAAACCTGACCCTGATACAATGCAGCCACTGGACGAAGGTTTTGGTGCAATTGTGCAGTCTTGCCGGCGACTGAGGCGGCTATCACTCTCAGGGAAGTTGACGGACCAGGTTTTCCTTTACATTGGAATGTATGCTGAGAAGCTTGAAATGCTGTCTATTGCATTTGCTGGAGACAGTGACAAGGGAATGCTGTATGTATTGAATGGATGCAAAAAACTGAGAAAGCTTGAGATAAGAGATTGCCCTTTTGGTGACTTGGCACTTCTGACAGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGCGAAGTGACTGTGGGAGCCTGCAAGTTGCTGGCCAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAAAGTGAGCAAGAAGATTGCATCCTGGAAGATGGGCAAAGGGTAGAGAAAATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTCTAG 1734 0.4579 MMNYFPDEVIEHIFDYVVSHRDRNALSLDREVYEAEGVHRELLLYLSGEVDPKGKPHFADFSLVPYGWGGFVYPWIEALAKSRVGLEELRLKRMVVSDESLELLSRSFTNFKSLVLVSCEGFSTDGLAAVAANCSEESWNVFLTPNIAGVLLVLKCRYLRELDLQENEVEDHKGHWLSCFPDSCTSLVSLNFACLKGEVSLGALERLVARSPNLKSLKLNRSVPLDALQRIMTRAPQLADLGIGSFVQDPESEVFIKLKNTILKCKSITSLSGLLEVAPHCLAAIYPICPNLTSLNLSYAAGVQGTDLIKLIRHCVKLQRLWIMDCIGDKGLGVVAKTCTDLQELRVFPSVPFGNALAVTEVGLVAISMGCPKLHSLLYFCQQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGKLTDQVFLYIGMYAEKLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDCPFGDLALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNESEQEDCILEDGQRVEKMYLYRTLAGKRKDAPEYVWTL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03656 577 Pfam Transport inhibitor response 1 protein domain 53 91 IPR041101 -
Vimu6g03656 577 SMART LRR_CC_2 108 133 IPR006553 -
Vimu6g03656 577 SMART LRR_CC_2 289 314 IPR006553 -
Vimu6g03656 577 SMART LRR_CC_2 480 505 IPR006553 -
Vimu6g03656 577 SMART LRR_CC_2 83 107 IPR006553 -
Vimu6g03656 577 SMART LRR_CC_2 431 454 IPR006553 -
Vimu6g03656 577 SMART LRR_CC_2 371 395 IPR006553 -
Vimu6g03656 577 CDD F-box_AtTIR1-like 2 28 - -
Vimu6g03656 577 Gene3D Ribonuclease Inhibitor 48 577 IPR032675 -
Vimu6g03656 577 FunFam Transport inhibitor response 1 137 577 - -
Vimu6g03656 577 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 69 536 - -
Vimu6g03656 577 Pfam F-box 3 38 IPR041567 -
Vimu6g03656 577 SUPERFAMILY RNI-like 54 537 - -
Vimu6g03656 577 Gene3D - 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03656 Vimu-Chr6 34261976 34264367 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03656 - - gmx:100812516 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03656 6 34261976 34264367 Vimu6g03656 6 34261976 34264367 ECH