Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03648 ATGTCTGAATCCACCAGGATTAACTGTCTTTTCTGTCCCACACATGTAGATCATACAACTGTTTTTTTTTGTTCAATTATTATTATTATTAACCTTCTAGTTGAATTCCAGTACTTTTATGCTGTTAAAAAATGTGCCAACTATGCTTTATTACCTCATCAAGATGCTTTGCTTGAAAGAATGGGGTGCACTTACTCTGTGTATAGGAAAAAAAAGACAAACTTTCCTGAAGTGGTGGTGTTTGTTCCATCAACAAGAATTCCGGTGCAATCTGATCTTCAAAGGGTGCTTAAGGGTGTAATTCCACGGGATCTTGCTGATAAATTGACCTCACTAAGGAATCAGATAGTGTTGGTAGCAGAGGATACTGGTGGATCAGCTATAGCTGAATTGCGGCGAGCTTTGAATGAATACTTGTCTCTTCTGATTGGACTTACAAAGAAAGAGTATGGTCTCGAAGGACTAATAGATTTCAGATGGAAACATTTAGAAGATGGGAAACAAGATAGCAGTGTAGCAAATACCTGGTTTGAGGTGCTCTCTGCAGTGCACCTTATGGCTATGCTCACACTGTCTGAGGCTGACTCAATGATGATTCCAAAGGACTCGTCAGGCTCTGGATTCAGGGTTGTATCTTCAGATAGCAAGAGGGAAGCAATTGATTTGTTGCTGAAGGCCTCAGGATACCTAGACTTCTGTTTAAGGGATATTCTTACTCGGATACCTCCTGAAATCAGCAGCACTGAACACCCTATAGTAAAGTACATTCAAACAAAATCCAGGAATACTTTTCCCCACGACTTACAGGAGGGTGTGTTGGAGGCTATTGCTATTCAAACACTTGGCCAGGGAACTGAGATTCAACTTGGTCTTGCTGTGGAATGTCAGAAGGCAACTTTGTCTGTGAAGAGGAGATTGGCATGTGAACAGCTGATATACTTTAGTCAGGCTTATCACTGCTTGTTAGGATGTGACATCAACCAAGGGAGTGGAAGAAAGCATCTCCGATTTATCAAATGGAAATTCCTTGAAGCCAAGGCTGCAGCCTACTACTACCATGGTCTGATCCTTGACAAGGGTAATGAACCAAACAGTTCCATTGGTGCTGTGTCTTGTTTTCTTGCTGCAGAAGAGCTTCTGGCTGAAAGCAAGAAGGCCAGCTTAAGCTTTTGCCTTGCAGCTCCAGTTACAAGGGTTCCTCCACTCTGGGGTGCTATGAAATTCTTACACCAGAAAATTCCTGAAGTTGCATCAAGGAAGTCTCAGATGTATGGCTACCTCTGGGAGCAAGAGAAGGGTCTCCAATCATTGCCAGATCTTCCTGATTTCCAATTATCATTACGTCCAGATGACTATGAACTGCCTGAAATTGATCCAGCATGGGATAGTAGAAACTGGGAATCTCTAGGACAGCCATTGAAGGAGCACCTTATAGATAGTGATGAGAATCCAACTGACTGA 1461 0.423 MSESTRINCLFCPTHVDHTTVFFCSIIIIINLLVEFQYFYAVKKCANYALLPHQDALLERMGCTYSVYRKKKTNFPEVVVFVPSTRIPVQSDLQRVLKGVIPRDLADKLTSLRNQIVLVAEDTGGSAIAELRRALNEYLSLLIGLTKKEYGLEGLIDFRWKHLEDGKQDSSVANTWFEVLSAVHLMAMLTLSEADSMMIPKDSSGSGFRVVSSDSKREAIDLLLKASGYLDFCLRDILTRIPPEISSTEHPIVKYIQTKSRNTFPHDLQEGVLEAIAIQTLGQGTEIQLGLAVECQKATLSVKRRLACEQLIYFSQAYHCLLGCDINQGSGRKHLRFIKWKFLEAKAAAYYYHGLILDKGNEPNSSIGAVSCFLAAEELLAESKKASLSFCLAAPVTRVPPLWGAMKFLHQKIPEVASRKSQMYGYLWEQEKGLQSLPDLPDFQLSLRPDDYELPEIDPAWDSRNWESLGQPLKEHLIDSDENPTD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03648 486 CDD BRO1_Alix_like 71 450 - -
Vimu6g03648 486 Gene3D alix/aip1 like domains 91 470 IPR038499 -
Vimu6g03648 486 ProSiteProfiles BRO1 domain profile. 64 486 IPR004328 -
Vimu6g03648 486 SMART BRO1_2 79 457 IPR004328 -
Vimu6g03648 486 PANTHER UNCHARACTERIZED 61 468 IPR038898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03648 Vimu-Chr6 34209885 34213092 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03648 - - gmx:100803541 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03648 6 34209885 34213092 Vimu6g03648 6 34209885 34213092 ECH