Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03571 ATGACCAACAAAAAAGCATTATCTGTCTCAACCGTTGTTAGTGGCTTTTATTTCGGTCATAGGGCGCAAAAGATGAGAGTTATGGAGTTACCACCCTCAGGTGACAATGGTTCTTCTACTAACGAAGATGAACCTCAGGATGCAGATTATAGTATAAGTGACGAGCTGGAGACTTCAATCTTGGCAAGATTTCCAAGGTCACAGCTTTGGAAATTGTGCTTTCTAAACAAGCGGTTCTTGGCGCTAGCGAGGAGTGGCGAGATTTACAAAATCAGGAGGCACTTGGGACTGAAAGAACCATCTGTGTTTATGTTAGCTAGTGGGGAGAGCAATTGGTGGGGAATGGAGTGGCCTTTCATGTCAAGCAAGAAGCTTCCTCCTATTCAATCGGATTATAATTTTGAGTGTGGAGACAAAGAGTCATGTTGTGCAGGATCCCACCTATTAGTCTTTGGCAAGGAGATTGATGGGGCTGTAACATGGAGGTTTGATTCAACCAATAATGAATGGCTCAAAGGGCCTTCTATGATCAACCCAAGGTGTCTTTTTGCATCAGCCACATCTGGTGCAATTGCTTTTGTTGCAGGGGGCTATGATGCAACAACTTACACCCAAATTTTGGATTCTGCTGAGATGTACAACTCTGAAAGCCAGAGTTGGAAACCCCTCCCAAGGATGAACAAAAGGAGGAAGTTTTGCTCAGGTTGCTTCATGGATAACAAGTTCTATGTCCTTGGAGGGAAAGATGAGGATGGAAGGGTCCTCACTTGCGGCGAATTCTTTGATGGGAAGACATGGAAGTTGATTCCTGACATGTGGAAGGATAATTCTCAACTCTCTCCACCACTCCTTGCTGTTGTGAACAATGAGCTGTACACACTGGATGCTTCTTCAAATGAACTGAAGGTCTATATGAAGGGAAGCAATTCATGGAAGACTTTGGGAGTAGTTCCTGTGAGAGCTGATGAACAAAGAGGTTGGGGTGTGGCTTTTAAATCTCTTGGTGACGAGTTGCTTGTGATTGGTGCACCTTCTGTGTCACAGGCAGAGCGAGGCTTGTGTATGTACACTGGTTCTCCTGATCCTGCTGATGACAAATTCAGGTGGAGGCAAATTGGATGTAGCACCATTCAGCTCAATCACTTTATCCGCAATTGTGCTGTCATGTGGACCTGA 1176 0.4481 MTNKKALSVSTVVSGFYFGHRAQKMRVMELPPSGDNGSSTNEDEPQDADYSISDELETSILARFPRSQLWKLCFLNKRFLALARSGEIYKIRRHLGLKEPSVFMLASGESNWWGMEWPFMSSKKLPPIQSDYNFECGDKESCCAGSHLLVFGKEIDGAVTWRFDSTNNEWLKGPSMINPRCLFASATSGAIAFVAGGYDATTYTQILDSAEMYNSESQSWKPLPRMNKRRKFCSGCFMDNKFYVLGGKDEDGRVLTCGEFFDGKTWKLIPDMWKDNSQLSPPLLAVVNNELYTLDASSNELKVYMKGSNSWKTLGVVPVRADEQRGWGVAFKSLGDELLVIGAPSVSQAERGLCMYTGSPDPADDKFRWRQIGCSTIQLNHFIRNCAVMWT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03571 391 SMART kelc_smart 191 240 IPR006652 GO:0005515
Vimu6g03571 391 SMART kelc_smart 147 190 IPR006652 GO:0005515
Vimu6g03571 391 MobiDBLite consensus disorder prediction 29 48 - -
Vimu6g03571 391 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 51 389 - -
Vimu6g03571 391 SUPERFAMILY Kelch motif 137 343 IPR015915 GO:0005515
Vimu6g03571 391 Gene3D - 90 373 IPR015915 GO:0005515
Vimu6g03571 391 Pfam Kelch motif 179 227 IPR006652 GO:0005515
Vimu6g03571 391 Pfam Kelch motif 229 272 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03571 Vimu-Chr6 33008013 33011134 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03571 - - gmx:100777338 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03571 6 33008013 33011134 Vimu6g03571 6 33008013 33011134 ECH