Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03564 ATGGCTCTTCAAGGTTCAATGAGTTTTGCTGCTTTCACCTTTTTCTTGCTCCTCACAACCCTCCCACATGAACCACATGCTTCAAGCCGTGGCTCCTTTGCCAGAAACATTAACCCTCCGCTGTCTGGTCTATGTTCCTCTTCTGTCATTGTGCATGGATACCAGTGCCAAGAACACCAGGTTATAACAAAAGATGGATACATTCTGAGTGTGCAAAGGATCCCAGAAGGTCGTGGTAAGGGCAGCGGTAGAAGAACTAGCAAACAACCAGTAATCATACAACACGGAGTTCTAGTGGATGGTATAACATGGCTTCTGAATTCTCCAGAGCAAAACCTACCTTTGATTTTAGCTGATAATGGCTTTGACGTGTGGATTGCAAACAGCAGAGGAACCAGATTTAGCCGCCGACACATCTCATTGGACCCCTCTAGTCCGGCCTTCTGGAATTGGTCTTGGGATGAACTTGTCTCCTATGATCTACCAGCTGTCTTTAATTATGTATTCAGCCAAACAGAGCAGAAGATCAATTACATTGGCCACTCCTTGGGAACTTTGATAGCTTTAGCATCCTTTTCCGAAGGAACATTGGTTAACCAGCTGAAATCAGCAGCCTTGTTGAGCCCTATAGCCTATTTAAGCCACATGAACACAACACTTGGTGTTATTGCTGCTAAGTCCTTCGTTGGTGAGGTCACTACCCTCTTCGGTCTGGCAGAATTTAATCCAAAAGGGTTACCTGTTGATGCCTTCCTCAAGTCTCTCTGTGCTTACCCTGGGATAGACTGCTACGACTTGATGACTGCATTAACTGGTAAAAATTGCTGCCTCAATTCTTCAACTGTTGATCTATTCTTGATGAATGAACCTCAGTCAACATCAACAAAGAACATGGTGCACTTGGCTCAGACTGTAAGACGTGGGGTGTTGACAAAATTTAATTATGTGAGACCAGACTATAATATTATGCATTATGGAGAAGTATTCCCTCCTATCTACAACCTTTCCAATATCCCTCATGACCTCCCTCTCTTCATTAGCTATGGTGGAAGAGATGCACTTTCAGATGCTCGTGATGTTGAGAATTTACTTGATAAACTCAAGTTCCATGATGAGGACAAGCTCAGTGTTCAGTTCATCGAGGAATATGCTCACGCCGACTATGTAATGGGGTTCAATGCCAAGGACTTGGTATACAATGCTGTTGTTTCATTTTTCGATCATCAAGTTAACACTTGA 1239 0.4342 MALQGSMSFAAFTFFLLLTTLPHEPHASSRGSFARNINPPLSGLCSSSVIVHGYQCQEHQVITKDGYILSVQRIPEGRGKGSGRRTSKQPVIIQHGVLVDGITWLLNSPEQNLPLILADNGFDVWIANSRGTRFSRRHISLDPSSPAFWNWSWDELVSYDLPAVFNYVFSQTEQKINYIGHSLGTLIALASFSEGTLVNQLKSAALLSPIAYLSHMNTTLGVIAAKSFVGEVTTLFGLAEFNPKGLPVDAFLKSLCAYPGIDCYDLMTALTGKNCCLNSSTVDLFLMNEPQSTSTKNMVHLAQTVRRGVLTKFNYVRPDYNIMHYGEVFPPIYNLSNIPHDLPLFISYGGRDALSDARDVENLLDKLKFHDEDKLSVQFIEEYAHADYVMGFNAKDLVYNAVVSFFDHQVNT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03564 412 Gene3D alpha/beta hydrolase 35 408 IPR029058 -
Vimu6g03564 412 SUPERFAMILY alpha/beta-Hydrolases 52 407 IPR029058 -
Vimu6g03564 412 PIRSF Steryl_ester_lip 6 411 IPR025483 GO:0016788
Vimu6g03564 412 PANTHER LYSOSOMAL ACID LIPASE-RELATED 47 407 - -
Vimu6g03564 412 Pfam Partial alpha/beta-hydrolase lipase region 50 107 IPR006693 GO:0006629
Vimu6g03564 412 FunFam Lipase 37 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03564 Vimu-Chr6 32901894 32905914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03564 40 412 Acyl Lipid Metabolism Gene Families AT2G15230 37.802 1.43e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03564 K01052 - gmx:100779460 722.235