Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03560 ATGGCTGTGACTCCCAAAATTGCTCCTTCCATGCTCTCTTCCGACTTCGCCAATTTGGCTACCGAGGCTCAGCGCATGCTCGACTTTGGCGCCGATTGGCTTCATATGGACATCATGGATGGGCACTTTGTCCCCAATTTAACTATTGGCGCTCCTGTTATTGAAAGTTTGAGAAAGCACACAAAGGCATATTTGGATTGTCACCTTATGGTTACAAATCCTCTTGATTATGTTGAACCCTTGGCAAAAGCTGGTGCTTCTGGTTTTACATTTCATATTGAGACAGCAAAAAATGACTGGAAAGAACTTATCCAAAGAATTAAGTCACATGGCATGAGGCCTGGGATATCATTAAAGCCTAGGACTCCCATTGAAGAGGTTTTTCCTTTGGTGGAAGCTGAAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGAACCTGGATTTGGAGGACAAAAGTTTATGCCAGAGATGATGGATAAAGTACGTATACTTAGGAAGAAGTATCCATCACTTGACATTGAGGTATCTCAGCCTATTTTTTTGACTGACTTTTTTTTTCAA 564 0.4167 MAVTPKIAPSMLSSDFANLATEAQRMLDFGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLAKAGASGFTFHIETAKNDWKELIQRIKSHGMRPGISLKPRTPIEEVFPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVSQPIFLTDFFFQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03560 188 FunFam ribulose-phosphate 3-epimerase isoform X2 1 183 - -
Vimu6g03560 188 CDD RPE 6 176 IPR000056 GO:0005975|GO:0016857
Vimu6g03560 188 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 5 176 IPR000056 GO:0005975|GO:0016857
Vimu6g03560 188 Pfam Ribulose-phosphate 3 epimerase family 6 174 IPR000056 GO:0005975|GO:0016857
Vimu6g03560 188 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Vimu6g03560 188 SUPERFAMILY Ribulose-phoshate binding barrel 5 176 IPR011060 -
Vimu6g03560 188 Gene3D Aldolase class I 1 179 IPR013785 -
Vimu6g03560 188 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03560 Vimu-Chr6 32848656 32851519 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03560 K01783 - gmx:100500085 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03560 6 32848656 32851519 Vimu6g03560 6 32848656 32851519 ECH