Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03558 ATGATGAACAAGCTGAGGCAATATGAACGTTTATTCAAGCAGTTTGACGAGAATGGTGACGGGAAGATATCGGCGTGGGAGCTGAAAGAATGCGTGGAGGCGATGGGTGAGGAGTTGTCGGCGGAGGATGCGGCGGCGAGTGTGATTATGCTGGACGCGGACGGAGATGGGTTGGTGGGATTTGATGATTTTGTGAGGTTTGTGGAAGGAGGGAAAGAAGAAGAGAAAGAGAATGACCTAAGAGAAGCTTTTAAGATGTATGAGATGGATGAGAGTGGTTGCATCACACCCAGGAGTCTTAAAAGGATGCTTAGTAGATTGGGTGAATCCAGGACTATAGATGAGTGTCAAGTTATGATAGCTAGATTTGATCTTGATGGAGATGGTGTCCTCACATTCAATGAATTTAAGGTCATGATGTTGTAG 426 0.4554 MMNKLRQYERLFKQFDENGDGKISAWELKECVEAMGEELSAEDAAASVIMLDADGDGLVGFDDFVRFVEGGKEEEKENDLREAFKMYEMDESGCITPRSLKRMLSRLGESRTIDECQVMIARFDLDGDGVLTFNEFKVMML 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03558 141 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Vimu6g03558 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Vimu6g03558 141 SMART efh_1 115 141 IPR002048 GO:0005509
Vimu6g03558 141 SMART efh_1 43 71 IPR002048 GO:0005509
Vimu6g03558 141 SMART efh_1 7 35 IPR002048 GO:0005509
Vimu6g03558 141 SMART efh_1 79 107 IPR002048 GO:0005509
Vimu6g03558 141 Gene3D - 70 141 - -
Vimu6g03558 141 Gene3D - 1 69 - -
Vimu6g03558 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Vimu6g03558 141 SUPERFAMILY EF-hand 5 140 IPR011992 -
Vimu6g03558 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 78 140 - -
Vimu6g03558 141 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Vimu6g03558 141 Pfam EF-hand domain pair 8 68 IPR002048 GO:0005509
Vimu6g03558 141 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Vimu6g03558 141 FunFam Calcium-binding protein CML38 71 141 - -
Vimu6g03558 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Vimu6g03558 141 CDD EFh 7 68 IPR002048 GO:0005509
Vimu6g03558 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Vimu6g03558 141 CDD EFh 79 140 IPR002048 GO:0005509
Vimu6g03558 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03558 Vimu-Chr6 32816647 32817574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03558 3 140 EF-hand Containing Proteins AT1G76650 49.275 1.27e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03558 K13448 - gmx:100784553 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03558 6 32816647 32817574 Vimu6g03558 6 32816647 32817574 ECH
Vimu6g03558 6 32816647 32817574 Vimu8g00565 8 12075085 12075510 PCT