Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03541 ATGTCATCTCCTGACGTTGTCTCGCTATTGGAGAGTTCGAAGGAGCTCGATCGGGTAAGGAAAGAACAGGAGGAGATTCTCTCAGAAATCAACAAGCTCCACAAGAAGCTTCAAACGAACACTTCCATAAGGAAGTTAGTTTCAACTGTCATCACAATGTACTGGTATATTAGTGAGAATAATGAACGCCCTTGGAAGGATCCTTGGGTATCCATATCGACTTCAGTTTGGGCTGGATCTCAGATGGCTGAGCAGAATCTAGCTCCTGAAGTGGTTGAGAAGCCTGGGGATACCTCATTGGCAAGGCTTAAAGTGTTATACACTCAAGCAAAAGATCTTTCGGAAAGTGAAGCCAGTATTTCCAACTTAATGTTAAGCCAAATCGATGGAATCCTGCCTACGGGTCCACAGGGGCAAACACGAAGAAGAATAGGAAAAGGTAAAGTCTACTCTTTGGATACTCATCTCTGCTGCAATGTGGAAGGTAATGAGCAGAAAAGGAAACGAGTAAAGACTGAGTCCGATATTTCAAGACTAAATCCTACTATGCGACATCATCTTGATGCTTGTGCCAGTCTTAAAGGAGAACAGGTAGCAGCTAGGGTCACACCACGAAATGCTGATAAGGATGAATGGTTTGTTGTAAAAGTGATTCATTTTGACAAGGAATCAAAGGAATTTGAAGTACTAGATGAGGAACCGGGTGATGACGAAGAAAGCAGTGGCCAAAGACAGTACAAGCTTCCCATGGGAAATATCATTGCTTTTCCCAAGAGTAATGATCCTTCTAGTGCTCCAGATTTCCCACCTGGAAAACATGTTTTGGCGGTCTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCCTCGCAGAGTAATAATTCTCTCATTTTCTTCAGTATACTATGTGTTGGAATTTGATGATGACGAAGAAGATGGATCTTTACCTCAAAGGACTGTGCCCTTCCATAAAGTAGTTCTTCTTCCAGAAGGACATCGCCAATGA 1017 0.4267 MSSPDVVSLLESSKELDRVRKEQEEILSEINKLHKKLQTNTSIRKLVSTVITMYWYISENNERPWKDPWVSISTSVWAGSQMAEQNLAPEVVEKPGDTSLARLKVLYTQAKDLSESEASISNLMLSQIDGILPTGPQGQTRRRIGKGKVYSLDTHLCCNVEGNEQKRKRVKTESDISRLNPTMRHHLDACASLKGEQVAARVTPRNADKDEWFVVKVIHFDKESKEFEVLDEEPGDDEESSGQRQYKLPMGNIIAFPKSNDPSSAPDFPPGKHVLAVYPGTTALYKATVVQGPRRVIILSFSSVYYVLEFDDDEEDGSLPQRTVPFHKVVLLPEGHRQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03541 338 Gene3D - 260 338 - -
Vimu6g03541 338 FunFam SAGA-associated factor 29 isoform X6 196 259 - -
Vimu6g03541 338 Coils Coil 16 40 - -
Vimu6g03541 338 CDD Tudor_SGF29_rpt1 194 260 IPR047288 -
Vimu6g03541 338 ProSiteProfiles SGF29 C-terminal domain profile. 188 338 IPR010750 -
Vimu6g03541 338 FunFam SAGA-associated factor 29 isoform X6 260 338 - -
Vimu6g03541 338 Gene3D - 196 259 - -
Vimu6g03541 338 CDD Tudor_SGF29_rpt2 268 332 IPR047287 -
Vimu6g03541 338 PANTHER UNCHARACTERIZED 16 338 IPR037802 GO:0000124
Vimu6g03541 338 Pfam SGF29 tudor-like domain 194 332 IPR010750 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03541 K11364 - gmx:100807100 441.81