Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03496 ATGGCTTCTTCTTTGTTGATTTCGTGTCTTGTTTTGGTTTCGCTAGCCTCTTCTGCACTCTGTGCCGCCCCACGAAGACCAGTGGATGTTCCATTTGGCAGAAACTACATTCCCACGTGGGCTTTCGATCACATCAAATACTTCAATGGGGGTTCTGAGGTTCAACTTCATCTTGACAAGTACACTGGCACTGGCTTCCAATCAAAAGGGTCATATCTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCTGGTGATTCAGCTGGCACATTGTTGATTTGCTACGATTGGAACATGCAGTTATCATCTCAAAACGCGGAGCACGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAGACAAATGTGTTCACTGGAGGGAAGGGTGATAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACAAAAGCATATCACAGATATTCTGTACTATGGAACATGTATCAAATTGTATTCCTAGTGGATAACATCCCAATCAGGGTGTTCAAGAATCTGAAGGAGTTGGGAGTGAAGTTTCCCTTTGACCAACCGATGAAGGTTTACAACAGTTTGTGGAATGCTGATGATTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCAAAAGCTCCTTTCGTAGCAGAGTACAAGGGGTTTCACGTTGATGGGTGTGAGGCTTCAGTGAATTCAAGGTTCTGTGCCACACAGGGCAAAAGATGGTGGGACCAAACAGAGTTTCGTGATCTTGATTCCTTTCAGTGGCGAAGACTCAAATGGGTGCGTCGGAAATTCACCATCTACAACTACTGCACTGACAGAACCCGCTACCCTCAACTTCCACCAGAATGCAGAAGAAACCGTGACATTTAA 897 0.4482 MASSLLISCLVLVSLASSALCAAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEVQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTLLICYDWNMQLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFDQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRRKFTIYNYCTDRTRYPQLPPECRRNRDI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03496 298 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 225 IPR000757 GO:0004553|GO:0005975
Vimu6g03496 298 PIRSF EndGlu_transf 1 297 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g03496 298 CDD GH16_XET 27 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g03496 298 Gene3D - 17 298 - -
Vimu6g03496 298 Pfam Glycosyl hydrolases family 16 33 218 IPR000757 GO:0004553|GO:0005975
Vimu6g03496 298 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 296 IPR013320 -
Vimu6g03496 298 ProSitePatterns Glycosyl hydrolases family 16 active sites. 111 121 IPR008263 GO:0004553|GO:0005975
Vimu6g03496 298 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 31 292 IPR044791 GO:0004553
Vimu6g03496 298 FunFam Xyloglucan endotransglucosylase/hydrolase 19 294 - -
Vimu6g03496 298 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 245 292 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03496 Vimu-Chr6 31874893 31876055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03496 9 298 Glycoside Hydrolase AT5G13870 76.897 2.73e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03496 K08235 - gmx:100779122 556.599