Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03495 ATGGTTTCTTCTTTGTGGACCGTGTCTCTGATATTGGCATCGCTGGCCTCTGCAGCACTTTGTGCCAACCCGAGGAGGCCAGTGGATGTACAATTCGCTAGAAACTACGTTCCTACATGGGCTTTTGATCACATCAAATACTTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGACAAGTACACTGGTACTGGCTTTCAGTCCAAAGGGTCATACTTGTTTGGCCATTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCAGCCGGCACAGTCACTGCTTTCTATTTATCATCTCAAAACGCGGAGCACGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACCGGAGGAAAGGGTGACAGAGAGCAAAGAATCTATCTCTGGTTTGACCCCACCAAAGCATACCACAGATACTCTATTCTGTGGAACTTGTATCAGATTGTGTTCTTTGTGGACGATGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAGTTTCCATTCGACCAACCTATGAAGATATACAACAGTCTGTGGAATGCTGATGACTGGGCAACAAGGGGTGGTTTGGAGAAAACAGATTGGTCGAAAGCTCCTTTCATAGCAGCGTATAAGGGGTTCCACATCGATGGGTGTGAGGCCTCTGTGAACGCCAAGTTCTGCGACACACAGGGCAAGAGATGGTGGGACCAACCGGAGTTCCGTGACCTTGACGCAGCTCAATGGCAAAGACTCAAATGGGTGCGTCAGAAATTCACCATCTACAACTACTGCACTGACAGAAAACGCTACCCTCAACTTCCCCCTGAATGCAGAAGAGACCGCGACATTTAA 882 0.4694 MVSSLWTVSLILASLASAALCANPRRPVDVQFARNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSILWNLYQIVFFVDDVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQRLKWVRQKFTIYNYCTDRKRYPQLPPECRRDRDI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03495 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g03495 293 FunFam Xyloglucan endotransglucosylase/hydrolase 19 289 - -
Vimu6g03495 293 Gene3D - 17 293 - -
Vimu6g03495 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Vimu6g03495 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vimu6g03495 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 291 IPR013320 -
Vimu6g03495 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g03495 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 287 IPR044791 GO:0004553
Vimu6g03495 293 Pfam Glycosyl hydrolases family 16 34 213 IPR000757 GO:0004553|GO:0005975
Vimu6g03495 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 220 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03495 Vimu-Chr6 31866969 31868212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03495 7 293 Glycoside Hydrolase AT5G13870 80.139 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03495 K08235 - gmx:547775 594.734