Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03459 ATGGCCACCGCTTCCCAAGCTCAATCCCAACCACTTCCTCTTCAAGACCGAGTCGCAATCGTCACCGGCTCTTCGCGCGGAATCGGCCGCGAAATCGCGATTCACCTCGCTTCACTCGGTGCGCGAATCGTCATCAATTACACCTCCAACTCGTCCCAAGCCGAGTCAGTTGCCGCTCAAATCAACGCCAACTCCGCCACACCGCGCGCCGTCGTGGTCAAGGCTGACGTGTCCGAACCGAGCCAAGTCAAGTCCCTCTTTGACTCTGCGGAGCGCGCCTTTGACTCGCCGATCCACATCCTGGTCAATTCGGCAGGCGTCCTCGACGGCACGTACCCCTCCATTGGGAACACCACCATGGAGTCCTTCGACCACACCTTCACGGTGAACACGCGCGGCGCGTTTGTGTGCGCGAGGGAGGCGACGAACCGGTTGAAGCGCGGCGGCGGGGGCCGGATCATTCTGGTGACGTCGTCGCAGGTGGCGGCGCTGCGGCCGGGATTCGGTGTTTACGCTGCATCGAAGGCTGCGGTGGAGGCGATGGTGAAGGTGCTGGCGAAGGAGCTGAAAGGAACGCAGATCACCGCAAACTGTGTGGCGCCGGGGCCCATCGCAACGGAGATGTTTTTTGAGGGGAAGTCAGAGGAGACTGTGAATAGGATCGTGCAAGAGAGTCCTTTGGGGAGGCTGGGTGAGACCAAAGACGTGTCTCCTGTTGTGGGATTCTTGGCCACTGATGCTGCTGAATGGGTCAATGGTCAAATTGTTCGTGTTAATGGCGGTTATATTTAA 792 0.5922 MATASQAQSQPLPLQDRVAIVTGSSRGIGREIAIHLASLGARIVINYTSNSSQAESVAAQINANSATPRAVVVKADVSEPSQVKSLFDSAERAFDSPIHILVNSAGVLDGTYPSIGNTTMESFDHTFTVNTRGAFVCAREATNRLKRGGGGRIILVTSSQVAALRPGFGVYAASKAAVEAMVKVLAKELKGTQITANCVAPGPIATEMFFEGKSEETVNRIVQESPLGRLGETKDVSPVVGFLATDAAEWVNGQIVRVNGGYI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03459 263 CDD THN_reductase-like_SDR_c 14 263 - -
Vimu6g03459 263 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Vimu6g03459 263 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Vimu6g03459 263 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Vimu6g03459 263 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Vimu6g03459 263 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Vimu6g03459 263 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Vimu6g03459 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Vimu6g03459 263 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Vimu6g03459 263 Gene3D - 1 262 - -
Vimu6g03459 263 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 207 - -
Vimu6g03459 263 FunFam Short-chain dehydrogenase reductase 4 263 - -
Vimu6g03459 263 Pfam Enoyl-(Acyl carrier protein) reductase 23 262 - -
Vimu6g03459 263 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 6 261 - -
Vimu6g03459 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vimu6g03459 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Vimu6g03459 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03459 Vimu-Chr6 31343932 31346342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03459 18 261 Acyl Lipid Metabolism Gene Families AT1G24360 32.245 1.27e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03459 K00059 - gmx:100809416 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03459 6 31343932 31346342 Vimu6g03459 6 31343932 31346342 ECH