Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03446 ATGCAATCGCACCTTGTGGTTGGATCCATCTCCATAGGACGCTATGGTGGCGCCGCCGATTCCAGCCCCTTCCACTCCGCCGCACCTTCCTGCTGGACCAACCCTCCTCGCCGGCGCACTCCACTCGTCGTGGCCTCCTCCTCGCCCACCGCCATCAACGGCGGCCAGAATCACTACGCCGTGCTCGGAGTCGCCCGCAATGCCACCGCCGTCGACATCAAACGCGCTTATCGCCTCCTCGCCCGTAAGTACCATCCCGATGTTAGCAAGGATCCACATTCTGCGGAGTTATTCAAGAGCATCCGTCATGCATATGAAGTACTATCCAATGAAGCAACTAGAGTTCAGTATGATCAAGAACTTCACTTTAGTCATAGCTCTCACAGGGAAAAATGGAGTTACAGTACTGAGTTTGAAGATCAGGTAAGAGTCTATAGATGGGCTCACCTGAGGAAAAAAATGCATAGTGAGGATTACAACAGTGAAACCGAGGAGGAAGAAGATGAAGAAAATTTAGATGAAGAGAGGGGTTCTTTTATTGAAGTGCTTAGATCAGCGTTCTTGTCGTTATTTTTGTTTCAGACGTTTGGATCCCGACTCTCTCTTACATTTAGCGGCCTGACGGCATTGCTTGATCAAAAGTTAGACACAGGCTATAAAATTGGGTATGTAATAGCATGGATTTTGGGCGGGAGGGGTGGCATATTGCTAACATTGTGCTTGTCTTTTGCAAGTTGGGTTTGCGGGAAAACCAGTAGTAGTGTTGTTGCACTAATTGTGGTGGCCATGTGGGTTGGCTCCTACCTTGCAAGGTATGCACCACTTCCCCAAGGTGCTCTATTGGCGCTTCTCTACATGTCCATTAAGCTACAGTCTGACCTAATATAG 888 0.491 MQSHLVVGSISIGRYGGAADSSPFHSAAPSCWTNPPRRRTPLVVASSSPTAINGGQNHYAVLGVARNATAVDIKRAYRLLARKYHPDVSKDPHSAELFKSIRHAYEVLSNEATRVQYDQELHFSHSSHREKWSYSTEFEDQVRVYRWAHLRKKMHSEDYNSETEEEEDEENLDEERGSFIEVLRSAFLSLFLFQTFGSRLSLTFSGLTALLDQKLDTGYKIGYVIAWILGGRGGILLTLCLSFASWVCGKTSSSVVALIVVAMWVGSYLARYAPLPQGALLALLYMSIKLQSDLI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03446 295 SMART dnaj_3 56 113 IPR001623 -
Vimu6g03446 295 CDD DnaJ 57 110 IPR001623 -
Vimu6g03446 295 PRINTS DnaJ domain signature 93 113 IPR001623 -
Vimu6g03446 295 PRINTS DnaJ domain signature 59 77 IPR001623 -
Vimu6g03446 295 PRINTS DnaJ domain signature 77 92 IPR001623 -
Vimu6g03446 295 FunFam Uncharacterized protein 54 190 - -
Vimu6g03446 295 ProSiteProfiles dnaJ domain profile. 57 121 IPR001623 -
Vimu6g03446 295 Pfam DnaJ domain 57 118 IPR001623 -
Vimu6g03446 295 Gene3D DnaJ domain 46 142 IPR036869 -
Vimu6g03446 295 ProSitePatterns Nt-dnaJ domain signature. 98 117 IPR018253 -
Vimu6g03446 295 SUPERFAMILY Chaperone J-domain 56 126 IPR036869 -
Vimu6g03446 295 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03446 Vimu-Chr6 31219548 31224056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03446 57 121 Miscellaneous Gene Families AT5G49580 41.176 2.43e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03446 - - gmx:100791619 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03446 6 31219548 31224056 Vimu6g03446 6 31219548 31224056 ECH