Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03418 GATTTTGTTCTTGATCTCGCACATCTGAGTTACGTGCAAAGAAGACAGTTTTTAAGGAAACTGAGTTTTACATATCCTGTTGAATTAGTGTTAGTACTTACTATGGATCTGGATGGAATTGCTAAAATCTCATTGTTGTTGGTGGGGCTTTGGCTACTACTTAACTGGGCAGGGTTGTTGAGTGTAGATCAAATGAAGTACAAGGACCCTAACCTTTCAATAGATGCTCGGGTTGAGGATCTTCTTAGCAGGATGACTCTCGAGGAGAAAATTGGTCAAATGTTGCAGGTTGAGCGCAAGCATACATCTGCTGATTTGGTCAACAAGTATTTTATTGGTAGTGTAATGAGTGAGGGAGGGAGTATGCCGACTCCACAGGCATCTGCTGAAACTTGGGTTGACATGGTGAATGAATTTCAGAAGGGTGCTTTGTCAACCCGGCTTGGAATTCCAGTGTTTTATGGTGTTGATGCTGTTCATGGCCACAACACTGTTTACAATGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGCTTATGCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATACTGAACTAGTTCAAGCTATGACCGAAATCATACCAGGATTGCAAGGGGACATCCCTCATAATTTACCAAAGGGTGTCCCTTTTATCTCTGGAAAAGAAAAAGTTATAGGCAGTGCTAAGCACTATGTGGGTGACGGTGGAACAGTCAATGGGATTAATGAGCACAACACTGTTATAGATAGAGATGGATTGATGAAAATTCACATGCCACCTTACTTGACCTCAATCGATAAAGGTGTAGCAAGTATAATGGTCTCTTACTCCAGTTGGAATGGTGTAAAAATGCATGCTCACCATGATCTTATTACTGCCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTATTGATAGGATCACAACTCCACATCGTGCAAACATCAATTATTCAATCGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGTTTCCAAAGCTTTACACAGAATTCATAGATGGTCTATCCATGTTGGTGAAAAATGAGCGCATTCCCATGAGTCGAATTGATGATGCGGTGAGAAGAATTTTGTGGGTTAAGTTCATGATGGGTCTTTTTGAGAACCCTTATGCTGATTACAGTATGACCAAATATTTGGGAATCCAGGAGCACAGAAATTTGGCTAGAGAAGCGGTGAGAAAATCAATGGTCCTTCTGAAAAATGGTCAATCTGTTGATAAGCCTTTATTGCCTCTTCCTAAAAAGGCACCAAAAATACTTGTTGCTGGAATCCATGCAGATAATCTAGGATATCAGTGTGGTGGCTGGACTATAGAATGGCAAGGGGTCAGTGGGAACAATCTTCTCAAAGGGACTACAATTCTCAATGCTGTGAAAAACACTGTTGACCCTGAAACCACAGTGATCTACAAGGAGAACCCTGATGCAGAATTTGTTAAATCCAACGAATTTTCCTATGCTATTGTTGTAGTAGGAGAGCCTCCTTATGCTGAAACGCATGGTGACAACATGAACTTGGCAATCCCAGACCCTGGTCCTGAGATTATAAGAAACGTGTGTGGGGTAACAAAATGTGTGGTTATTGTAATTTCTGGTCGTCCTTTGGTGATTGAACCATATGTTGGTATGATAGATGCACTTGTTGCTGCATGGCTTCCTGGTAGCGAAGGTCAAGGTGTGGCTGATGTTTTATATGGTGACTATGCTTTCACTGGAAAGCTTCCAAGAACATGGTTCAAATCTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTTTTCCCATTTGGGTTTGGCCTTTCTACCCAAACTACTGAGGCCTTGTTCTCTGAGTAG 2013 0.4178 DFVLDLAHLSYVQRRQFLRKLSFTYPVELVLVLTMDLDGIAKISLLLVGLWLLLNWAGLLSVDQMKYKDPNLSIDARVEDLLSRMTLEEKIGQMLQVERKHTSADLVNKYFIGSVMSEGGSMPTPQASAETWVDMVNEFQKGALSTRLGIPVFYGVDAVHGHNTVYNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYAYAPCIAVCRDPRWGRCYESYSEDTELVQAMTEIIPGLQGDIPHNLPKGVPFISGKEKVIGSAKHYVGDGGTVNGINEHNTVIDRDGLMKIHMPPYLTSIDKGVASIMVSYSSWNGVKMHAHHDLITAFLKNTLHFKGFVISDFEGIDRITTPHRANINYSIEAGVSAGIDMFMFPKLYTEFIDGLSMLVKNERIPMSRIDDAVRRILWVKFMMGLFENPYADYSMTKYLGIQEHRNLAREAVRKSMVLLKNGQSVDKPLLPLPKKAPKILVAGIHADNLGYQCGGWTIEWQGVSGNNLLKGTTILNAVKNTVDPETTVIYKENPDAEFVKSNEFSYAIVVVGEPPYAETHGDNMNLAIPDPGPEIIRNVCGVTKCVVIVISGRPLVIEPYVGMIDALVAAWLPGSEGQGVADVLYGDYAFTGKLPRTWFKSVDQLPMNVGDPHYDPLFPFGFGLSTQTTEALFSE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03418 670 SUPERFAMILY (Trans)glycosidases 65 450 IPR017853 -
Vimu6g03418 670 Pfam Glycosyl hydrolase family 3 C-terminal domain 451 660 IPR002772 GO:0004553|GO:0005975
Vimu6g03418 670 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 451 660 IPR036881 GO:0004553|GO:0005975
Vimu6g03418 670 Gene3D - 60 435 IPR036962 GO:0004553|GO:0005975
Vimu6g03418 670 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 64 665 - -
Vimu6g03418 670 Pfam Glycosyl hydrolase family 3 N terminal domain 86 412 IPR001764 GO:0004553|GO:0005975
Vimu6g03418 670 PRINTS Glycosyl hydrolase family 3 signature 217 233 IPR001764 GO:0004553|GO:0005975
Vimu6g03418 670 PRINTS Glycosyl hydrolase family 3 signature 147 163 IPR001764 GO:0004553|GO:0005975
Vimu6g03418 670 PRINTS Glycosyl hydrolase family 3 signature 333 351 IPR001764 GO:0004553|GO:0005975
Vimu6g03418 670 PRINTS Glycosyl hydrolase family 3 signature 263 279 IPR001764 GO:0004553|GO:0005975
Vimu6g03418 670 PRINTS Glycosyl hydrolase family 3 signature 171 190 IPR001764 GO:0004553|GO:0005975
Vimu6g03418 670 FunFam Glycosyl hydrolase family protein 436 662 - -
Vimu6g03418 670 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 60 435 - -
Vimu6g03418 670 Gene3D - 436 663 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03418 Vimu-Chr6 30965976 30968828 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03418 8 662 Glycoside Hydrolase AT5G20950 66.311 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03418 K05349 - gmx:100816705 1125.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03418 6 30965976 30968828 Vimu6g03418 6 30965976 30968828 ECH