Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03416 ATGTTGAAATACGGAAATGTATACTATGATATGGAAAGTTTCAGTGTCGTAGATAGAACAGATACTGCATACAAGGGTGGGAAGGAAATGGCAAAAATCTCCATTTTGTTGGTGTGGTTTTGGCTACTAAGTGGCTGGACAGGATTGTTGAATGCAGAATACATGAAGTACAAGGACCCTAAACAATCAATTGACTCTCGAGTTGATGATCTTGTTAGCAGAATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAAATTGAACGCAAGTATGCATCTGCTGATTTGGTTAAGAAGTATTTTATTGGGAGTGTAATGAGTGAGGGAGGGAGTATTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTAACATGGTGAATGAATTTCAGAAGGGTGCTTTATCAACCCGGCTTGGAATTCCAATGTTTTATGGGATTGATGCTGTTCATGGTCACAATACTGTTTACAAAGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCAACCAGGGACCCTGAATTAGTCAAGAGAATTGGTGCTGCAACTGCACTTGAAGTTAGAGCAACAGGAATTCAATATGCTTATGCACCTTGTATAGCAGTATGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAGGATCCTAAATTAGTTCAAGCCATGACTGAAATCATACCAGGCTTGCAAGGAGACATCCCTGATAATTTACCAAAGGGTGTCCCTTTTATCGCAGGAAAAGAAAAAGTTCTAGCTTCTGCTAAGCACTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGAACAACACTGTTATTGACAGAGATGAATTGATGAAAATTCATATGCCAGCTTACTTCAATTCAATCAGCAAGGGTGTAGCAACCGTTATGGTTTCTTACTCCAGTTGGAATGGAGTAAAAATGCATACAAACCACGAACTTATTACTGGCTTCCTCAAGAATACTCTACATTTCAGGGGCATTGTTATTTCAGACTTTGAGGGTATTGATAGGATCACCTCTCCACCTCATTCAAACTTCACTTATTCAGTTGAAGCAGGGGTTTCTGCTGGCATTGACATGTTCATGAATCCAAAGTTTTACATAGAATTCATCGATGATCTAACCATGTTGGTGAAAAAGAAGTTCATTCCTATGAGTAGAATTGATGATGCAGTGAGAAGAATTTTGTGGGTTAAGTTCATGATGGGTATTTTTGAAAACCCTTTTGCTGATTTCAGTTTGGTCAGATATTTGGGAATCCAGGAGCATAGACAATTGGCTAGGGAAGCTGTAAGGAAATCTATGGTCCTTCTAAAAAATGGCCAAACTGCTGCCAACCCTTTATTGCCTCTTCCTAGAAAGGCACCCAAAATACTTGTGGCTGGAATCCATGCGGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGATTCAGCGGAAACAATCTTCTCAAAGGGACTACAATTCTCACAGCTTTGAAAAACACAGTTGATCCTGAAACCAAAGTGGTGTACAAGGAGAATCCTGATGCAGAATTTGTTAAATCCAACGGATTTTCATATGGGATAGTTGTAGTAGGAGAGCGTCCTTATGCTGAGATGCATGGTGACAACATGAACTTGACAATCCCAGAGCCTGGTCCTGAGATGATAAGAAACGTGTGTGGGGTAACAAAATGTGTGGTTATTGTAATTTCTGGTCGTCCTTTGGTGATTGAACCATATGTTGGTATGATAGATGCAGTTGTTGCTGCATGGCTTCCTGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGTGACTATGCTTTCACTGGAAAGCTTCCAAGAACATGGTTCAAATCTGTTGATCAACTGCCCATGAATGTTGGGGATCATCATTATGATCCCCTCTTCCCATTTGGATTTGGCCTGTCTACCGAACCTACTAAGGGATTTTACTCTGCCTAG 1983 0.4105 MLKYGNVYYDMESFSVVDRTDTAYKGGKEMAKISILLVWFWLLSGWTGLLNAEYMKYKDPKQSIDSRVDDLVSRMTLEEKIGQMLQIERKYASADLVKKYFIGSVMSEGGSIPAPQASAETWINMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVYKATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYAYAPCIAVCRDPRWGRCYESYSEDPKLVQAMTEIIPGLQGDIPDNLPKGVPFIAGKEKVLASAKHYVGDGGTINGIDENNTVIDRDELMKIHMPAYFNSISKGVATVMVSYSSWNGVKMHTNHELITGFLKNTLHFRGIVISDFEGIDRITSPPHSNFTYSVEAGVSAGIDMFMNPKFYIEFIDDLTMLVKKKFIPMSRIDDAVRRILWVKFMMGIFENPFADFSLVRYLGIQEHRQLAREAVRKSMVLLKNGQTAANPLLPLPRKAPKILVAGIHADNLGYQCGGWTIEWQGFSGNNLLKGTTILTALKNTVDPETKVVYKENPDAEFVKSNGFSYGIVVVGERPYAEMHGDNMNLTIPEPGPEMIRNVCGVTKCVVIVISGRPLVIEPYVGMIDAVVAAWLPGSEGQGVADVLYGDYAFTGKLPRTWFKSVDQLPMNVGDHHYDPLFPFGFGLSTEPTKGFYSA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03416 660 Pfam Glycosyl hydrolase family 3 N terminal domain 76 402 IPR001764 GO:0004553|GO:0005975
Vimu6g03416 660 PRINTS Glycosyl hydrolase family 3 signature 161 180 IPR001764 GO:0004553|GO:0005975
Vimu6g03416 660 PRINTS Glycosyl hydrolase family 3 signature 207 223 IPR001764 GO:0004553|GO:0005975
Vimu6g03416 660 PRINTS Glycosyl hydrolase family 3 signature 253 269 IPR001764 GO:0004553|GO:0005975
Vimu6g03416 660 PRINTS Glycosyl hydrolase family 3 signature 137 153 IPR001764 GO:0004553|GO:0005975
Vimu6g03416 660 PRINTS Glycosyl hydrolase family 3 signature 323 341 IPR001764 GO:0004553|GO:0005975
Vimu6g03416 660 FunFam Glycosyl hydrolase family protein 426 652 - -
Vimu6g03416 660 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 52 655 - -
Vimu6g03416 660 Gene3D - 50 425 IPR036962 GO:0004553|GO:0005975
Vimu6g03416 660 Pfam Glycosyl hydrolase family 3 C-terminal domain 441 650 IPR002772 GO:0004553|GO:0005975
Vimu6g03416 660 SUPERFAMILY (Trans)glycosidases 54 440 IPR017853 -
Vimu6g03416 660 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 50 425 - -
Vimu6g03416 660 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 441 650 IPR036881 GO:0004553|GO:0005975
Vimu6g03416 660 Gene3D - 426 652 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03416 Vimu-Chr6 30944345 30949164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03416 30 655 Glycoside Hydrolase AT5G20950 69.808 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03416 K05349 - gmx:100779642 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03416 6 30944345 30949164 Vimu6g03416 6 30944345 30949164 ECH