Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03414 ATGGAAGTAACTCTCCCCCCTCAAGTACAAAAGCAGAATTCGCATATAACAGGTCGCAAAATTTTATGTGTTGGATCCCAGAAGGATTTGTGGCTTGTTGTGCGAGAAGGATCTCTAAATGATGTAGAATTGGCCTTGGCATCATTGAAGAAGAGTGGGGGAAATATCAATTTGAGGAACACATTTGGGTTGACTCCTCTTCATATTGCAAGTTGGAGAAACCATATTCCCATTGTAAGGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCATAGGGCTCTACATTTTGGTCATCTTGCTGCGGCAAGCATCCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGCTCTTGGAAATGAACACAGTTCAGTGGCAACTGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCACATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGTGGTTCATTCATTAAGCTCATTTCTGCTGGGAAGTTCCATAGTGTGGCGCTCACTGCTCGTGGAGAACTGTATACCTGGGGATTTGGACGAGGTGGTCGTCTGGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGATTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTCATTGCTACTCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCCATTGATACACAACCCACTCCTCGTAGAGTATCTTCTTTGAGGTCAAAAGTTGTTGCTGTTGCTGCAGCAAATAAACACACGGCTGTAGTTTCTGATTTAGGTGAAGTCTTTACTTGGGGTTGTAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAATTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACACCAAAACGAGTTGTAGTTAGTAGGAACTTGAAGAAAAGTGGAAACACTCCTTTAAAATTTCACCGCAAGGAACGACTAAACGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCAGATCCGGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGTTAACATATCAGCTGGAAAGTACTGGACTGCAGCTGTTACAGCTACTGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTACATGGTGTAAAGAAGGCTACATCCGTTTCAGTTGGTGAAACACATTTACTAATCGTGGCTTCACTCTATCATCCTGTTTACGCTCCCAACATGATTCAAAATTCTCAGAAAGTCAAGTTGAATAACGGGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAGGATGTAGATTCCAGTGAGATGATATCTAGTGTGCAAAATGACACCAGCAGGCAGAGATCTACACCGAGCTTAAAAAGCCTTTGTGAAAAAGTAGCTGCAGAGTGTTTAGTGGAGCCTCGGAATGCAGTACAACTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTACATATTTACAGTTTCATCGCACACCATAGCAAGTGCATCACCTGATGTTCTTGCTAACCTTGAGAGGTTGCTAGACCAGAGGTCATCTGAGCCATGGAGTCACCGTCGGCTGCCTACGCCAACTGCTACCCTCCCTGCCATCATTAACAGCGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTCGTGACAAACCCTTGAAAACGGAAAACGTCCAAAGAGTAGATTCCTTTCTACAGCCCCAGGACGATTCTGATAAAGAAATCTCCAAAGTAGTCCGAGCTATAAGGAAAAAGTTGCAGCAGATTGAGATGCTTGAAGATAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAACTTCAATCGAAGTCAGCACTTGAAAGCTCACTTGCAGAGCTAGGTGTTCCTGTTGAGACATCACAAAATAAAGAATCATCTTCTACTTTACCAGAAGGGAAAGGCAGTAAGAAGGGTAAGCTATCAAAGAAACAAAGGAGAAAAAGTGGCAAATCAAACATAGGGCCAACAGAAATTGAATCTGTTCACTCTAAAAGTGAAGACGTTCCCAAATCGGAGGACCTGTTGGACATTCACATGATGGGGATTTCTGATTCAAAGGTGGAAGGGGATGCTGTTTGTGAACAAATCACGGTAGACCAGGCTGCAAAAGATTTAGCTTTTGTAATGCAGAAGAATGATGCTTTAGAGTTGCCAAAAGCTAAGGGTCCGTCACCAAAAGCTTCAAAAAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGGGCTCTTGATGAAGCCCCAAAAGAGGTGGCTCCTCCTCCACCACCAGCACCAAAAAATGATGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTGCTTCTCTTCGCGAAATCCAGGATGAACAAGGCAAAATAAAGATAAACAAGCCAGCCGGGAGCAAGGATAAGGTGGAAGATCTTTCTGATTTTGGCAGTGGAGTTAAGATAAAGTTGAGTTCATTTCTTCTTTCCAGTCCAATACCTGTTACCTCAACTCGTAGTTCCCAGGTATCTGATGGAGAAATAAATACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCATCCTTCTAGGCCATCCTTAAGGGACATCCAAATGCAACAGGAAAAGAAACAACAAAGCCTTTCACACAGTCCAACGACTAGAACGGCTGGGTTTTCCATTGCTACCGGTCAAGGTGGTTCACCGTCGGAAACAACTGGAATGAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCATCCTCAATTCGTTCTATTCAGATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTCAGGAAGGAATCTTGA 3240 0.4432 MEVTLPPQVQKQNSHITGRKILCVGSQKDLWLVVREGSLNDVELALASLKKSGGNINLRNTFGLTPLHIASWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQALGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGELYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVISGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSIDTQPTPRRVSSLRSKVVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGNTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVNISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYAPNMIQNSQKVKLNNGDDMEELNEDILFEDVDSSEMISSVQNDTSRQRSTPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHTIASASPDVLANLERLLDQRSSEPWSHRRLPTPTATLPAIINSEEDDSEIEFQRTRDKPLKTENVQRVDSFLQPQDDSDKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQSKSALESSLAELGVPVETSQNKESSSTLPEGKGSKKGKLSKKQRRKSGKSNIGPTEIESVHSKSEDVPKSEDLLDIHMMGISDSKVEGDAVCEQITVDQAAKDLAFVMQKNDALELPKAKGPSPKASKKKSKKGGLSMFLSGALDEAPKEVAPPPPPAPKNDGPAWGGAKFMKGSASLREIQDEQGKIKINKPAGSKDKVEDLSDFGSGVKIKLSSFLLSSPIPVTSTRSSQVSDGEINTPPWAASGTPPHPSRPSLRDIQMQQEKKQQSLSHSPTTRTAGFSIATGQGGSPSETTGMSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKES 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03414 1079 Pfam Ankyrin repeats (3 copies) 37 127 IPR002110 GO:0005515
Vimu6g03414 1079 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Vimu6g03414 1079 SMART ANK_2a 62 91 IPR002110 GO:0005515
Vimu6g03414 1079 SMART ANK_2a 96 125 IPR002110 GO:0005515
Vimu6g03414 1079 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Vimu6g03414 1079 MobiDBLite consensus disorder prediction 854 915 - -
Vimu6g03414 1079 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Vimu6g03414 1079 Gene3D - 25 121 IPR036770 -
Vimu6g03414 1079 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Vimu6g03414 1079 PANTHER BTK-BINDING PROTEIN-RELATED 26 1070 - -
Vimu6g03414 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Vimu6g03414 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Vimu6g03414 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Vimu6g03414 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Vimu6g03414 1079 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Vimu6g03414 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Vimu6g03414 1079 Gene3D - 390 510 IPR009091 -
Vimu6g03414 1079 Gene3D - 122 389 IPR009091 -
Vimu6g03414 1079 Coils Coil 704 724 - -
Vimu6g03414 1079 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Vimu6g03414 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Vimu6g03414 1079 MobiDBLite consensus disorder prediction 997 1038 - -
Vimu6g03414 1079 SUPERFAMILY RCC1/BLIP-II 404 507 IPR009091 -
Vimu6g03414 1079 SUPERFAMILY Ankyrin repeat 35 136 IPR036770 -
Vimu6g03414 1079 MobiDBLite consensus disorder prediction 963 981 - -
Vimu6g03414 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Vimu6g03414 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Vimu6g03414 1079 MobiDBLite consensus disorder prediction 752 771 - -
Vimu6g03414 1079 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Vimu6g03414 1079 MobiDBLite consensus disorder prediction 963 1041 - -
Vimu6g03414 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Vimu6g03414 1079 MobiDBLite consensus disorder prediction 752 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03414 Vimu-Chr6 30872821 30880910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03414 33 136 Acyl Lipid Metabolism Gene Families AT5G53470 33.654 1.19e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03414 K24810 - gmx:100800604 1861.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03414 6 30872821 30880910 Vimu6g03414 6 30872821 30880910 ECH