Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03393 ATGGTGAAACACATGTACTCGGTGGATTTGGTATTAAAAAGAAAGGAACAGCCTAGGCACACTGAGAGAAAACAGAGATCGGAGCACCCAAGGAGGGTTGTTGAGATCAACAGGCTTGCTGGAATTAACGAAATTGGCTGGCAAACACTGGAATACTGCTGGAGCATGGGATCAATTGTGGAGAAATTCTCTGTTTTGGATTTTGTTGATAAAGAAAATATTGAGGATATTTTGCCAATAAAGCCTCTGTCAATAGAATGCACCCCTTTCAAGCTTGTAGAGGAAGTCAAAGGATTGAAGGAGTTGGCTGCTACGCTATCTACAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCATTCCAAGGTTTGACTTGCTTAATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGACACTTTGAAGGTTCGTAATCATGTTGGACCATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGTGATATTTTGTGGCTGCAACGGGATTTTGGCATTTATGTCTGTAATATGTTTGATACTGGCCAGGTTTGTTTGTTCTAA 597 0.4104 MVKHMYSVDLVLKRKEQPRHTERKQRSEHPRRVVEINRLAGINEIGWQTLEYCWSMGSIVEKFSVLDFVDKENIEDILPIKPLSIECTPFKLVEEVKGLKELAATLSTVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDILWLQRDFGIYVCNMFDTGQVCLF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03393 198 SUPERFAMILY Ribonuclease H-like 70 196 IPR012337 -
Vimu6g03393 198 Pfam 3'-5' exonuclease 93 194 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vimu6g03393 198 Gene3D - 6 198 IPR036397 GO:0003676
Vimu6g03393 198 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 62 196 IPR045092 GO:0000175|GO:0000467
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03393 Vimu-Chr6 30577099 30585433 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03393 K12591 - vum:124834852 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03393 6 30577099 30585433 Vimu6g03393 6 30577099 30585433 ECH