Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03385 ATGAAGGTGGTGGCGCTAGTTAGCGGCGGCAAAGACAGTTGCTATGCCATGATGAAAGCTATTCATTATGGGCACGAGATTGTTGCATTGGCCAATTTGATGCCGCTTGATGATTCTGTGGACGAGCTCGATAGTTACATGTACCAAACTGTTGGACATCAAATTATTGTCAGGCATCAGGAGCTTGGTTACAAAGAAACTCAAGGTGATGAAGTCGAAGACCTGTTCACTTTGTTACGTGAAGTGAAAAGGAAGATACCCTCAGTTACTGCAGTGTCTTCTGGAGCCATTGCATCTGACTATCAGAGATTGCGGGTGGAAAGTGTTTGTTCAAGGTTAGGCCTTGTTTCTTTGGCATACTTATGGAAACAAGATCAGTCATTGCTTCTCCAGGAAATGATTACAAGTGGAATTGTAGCTGTAACCGTGAAGGTAGCTGCCATGGGTTTGGATCCTGCAAAGCACTTGGGTAAAGAATTAGCCTTCTTAACTGCTTATTTACATAAATTGAAAGAATTATATGGAATCAATGTTTGTGGTGAAGGAGGGGAATATGAAACATTAACTCTTGATTGTCCTCTCTTCTCTAATGCTCGCATTGTGCTCGATGAACATCAAGTTGTGATGCACTCTTCCGATGCCATAGCTCCTGTTGGAATCCTTCATCCCTTGGCATTTCATTTGGAAAATAAAGCTGATGTTCAGCATTTAAAATTGCAAGACAACATACATGACATTTGTACACAGAAACTAGGATCTGTGTATGAAGTACACGACAGTCTAGAAGGATGTTTGCAAGAAGACTTGAGGATTGTCTTAGGGAAAATTGAATCACAGTTATTGGGCCTTGGTTTTGGATGGGAAAATGTCCTCTATATTCACCTTTATATTGATGACATGAATAAGTTCTCTGAGGCAAATGAGACATATGTAAATTTTATAAGACAGGAGAAATGTCCATTTGGCGTCCCATCTCGTAGTACTGTTCAAGTGCCGCTTATAGAATCAGGTTTCAGCAGCGCATACATAGAAGTTCTGGTATCAAACAATAAAAGTAAAAAGGTTTTGCATGTGCAGAGTATTTCCTGTTGGGCACCTAGTTGCATTGGACCATACAGCCAGGCAACCTTGCATGAGGGTATACTTCACATGGCTGGTCAATTAGGGCTTGATCCTCCTACAATGAATCTTTGCCAGGGAGGCCCTGATGTTGAACTGGAACAAGCACTAAAAAACAGTGAAGCGGTGGCAAAATGCTATAATTGTTCAGTATCAACTTCTGCAATTGTTTTTGTTATTTATTGTTCTAAACGTGTTTCATCATCAGAGAGACTCAATATTCAGGAGAAACAAGAAACAATTCTTAGGCAGATGAAGATCTCCCATCTGCAGGAAACAGACACCTACAAAGGGTTGGATCCCTTGTTCCTATATGTTCTTGTTCCTGATCTACCTAAAAGAGCATGCGTAGAAGTAAAGCCTATTCTTTATGTTGAGGATGGAACAGATACAGTACCTGAGGCATTAACAGAAAGATCTAGATCAGAGACACCATCACATTATTGGGGTTTCAAGCCAGAAAATTGGCATGATTCTTGCATTCAGAAATGCGTGGTTTCTGGAAAGATATGTGCCATTATACTGAATATTACAAGTGAGCTGGCAACGAAGATATGTTTTGATTCCCAGCCTGCTGATAATGTGAATAATGGTCAATATTCTCTTCCTAATGCATATATGGAGAAGATGTCGAAGTTCTGCATTTATCTTCTTGACAAAGTTATGACTGATAATGACTTCACCTGGGAAGATATAATGAGTTTGAGGTTCTACATCCCGGAAAGCCTTCAAATGTCAGTGCAGCTATTACAACCTATGTTCTGCAATGCACTTTTTGAACTTTCGGAAATGAGTCACAATAACTTTAAAAATGGCGAGGAGCCAATCTTCAACATAGTTCCTGTCATAGGTACTGGGAAGTCTGCCTCATCCATGGACGATGTAGTAACCTGCGAATTATTGGCTCGGAAATACTGA 2037 0.4035 MKVVALVSGGKDSCYAMMKAIHYGHEIVALANLMPLDDSVDELDSYMYQTVGHQIIVRHQELGYKETQGDEVEDLFTLLREVKRKIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITSGIVAVTVKVAAMGLDPAKHLGKELAFLTAYLHKLKELYGINVCGEGGEYETLTLDCPLFSNARIVLDEHQVVMHSSDAIAPVGILHPLAFHLENKADVQHLKLQDNIHDICTQKLGSVYEVHDSLEGCLQEDLRIVLGKIESQLLGLGFGWENVLYIHLYIDDMNKFSEANETYVNFIRQEKCPFGVPSRSTVQVPLIESGFSSAYIEVLVSNNKSKKVLHVQSISCWAPSCIGPYSQATLHEGILHMAGQLGLDPPTMNLCQGGPDVELEQALKNSEAVAKCYNCSVSTSAIVFVIYCSKRVSSSERLNIQEKQETILRQMKISHLQETDTYKGLDPLFLYVLVPDLPKRACVEVKPILYVEDGTDTVPEALTERSRSETPSHYWGFKPENWHDSCIQKCVVSGKICAIILNITSELATKICFDSQPADNVNNGQYSLPNAYMEKMSKFCIYLLDKVMTDNDFTWEDIMSLRFYIPESLQMSVQLLQPMFCNALFELSEMSHNNFKNGEEPIFNIVPVIGTGKSASSMDDVVTCELLARKY 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03385 678 FunFam Endoribonuclease 349 497 - -
Vimu6g03385 678 Gene3D HUPs 1 138 IPR014729 -
Vimu6g03385 678 SUPERFAMILY YjgF-like 263 334 IPR035959 -
Vimu6g03385 678 Gene3D - 141 238 - -
Vimu6g03385 678 Pfam Endoribonuclease L-PSP 365 432 IPR006175 -
Vimu6g03385 678 Pfam Endoribonuclease L-PSP 262 337 IPR006175 -
Vimu6g03385 678 SUPERFAMILY YjgF-like 354 501 IPR035959 -
Vimu6g03385 678 Pfam Diphthamide synthase 1 210 IPR002761 -
Vimu6g03385 678 FunFam ATP-binding domain containing protein 1 139 - -
Vimu6g03385 678 CDD eu_AANH_C_2 372 496 - -
Vimu6g03385 678 Gene3D - 348 498 IPR035959 -
Vimu6g03385 678 PANTHER DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN 1 236 IPR030662 -
Vimu6g03385 678 CDD Alpha_ANH_like_IV 2 195 IPR002761 -
Vimu6g03385 678 FunFam Diphthine--ammonia ligase 140 236 - -
Vimu6g03385 678 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 222 - -
Vimu6g03385 678 NCBIfam diphthine--ammonia ligase 1 214 IPR002761 -
Vimu6g03385 678 Gene3D - 247 347 IPR035959 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03385 K06927 - gmx:100807009 1170.61