Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03382 ACTTCTGTTTACATTAGTTTTTCCATGGAAGCTCAACAGATTATTTCCAGATTTTGCCCAAAATCATCACTTGCGCCATCAATTCCAATGGTGAAGCAACCATTCTCTTTAAATTTCCCTCCTCTACACTCTTTATCTTCATACCCTTTTCTCCAGTCTCAGAATCTTGGCGTCCCTACTGGAGCTTTACATGCTATCAGCTTTGTGCACAAAGAAGTTTATCCTAGTTCTAGGAGAATATGGTGTAGCAAGAGTAGTAGTAGTAGTACTGCAGAACCAGAGGAGGACCATGAGGTGAGGGCTCAGGTCACAGTGACAAGGAAAAAGCTAGCAGTTTTCGTGTCTGGCGGAGGATCCAACTTCAGATCAATTCACGAGGCCTCTAAAAGGGGATCGCTTCACGGAGATGTTACTGTATTGGTCACAAATAAAAGAGACTGTGGAGGTGCACAGTATGCAAGAAATAATGGTATCCCAGTTATATTGTTCCCTAAAGCAAAGGATGAACCCGAGGGATTATCTCCTAGTGACCTTGTTGATACACTAAGGAAATTTGAGGTGGATTTTGTTCTTTTAGCTGGATACCTCAAATTGATACCTGTGGAATTGATCCGAGCTTATGAAAGATCTATATTCAACATTCATCCATCACTTCTTCCAGCTTTTGGAGGCAAGGGCTACTATGGCATGAAAGTTCATAAAGCAGTAATTGCTTCTGGAGCAAGGTTTTCAGGTCCTACTATTCATTTTGTTGACGAACACTATGACACAGGGCGTATCCTTGCACAGCGTGTGGTCCCTGTGCTTGCTAATGATACTGCAGAAGAGTTGGCTGCAAGGGAGCACCAGTTATATGTTGAGGTGGTGGAGGCTTTATGTGAAGAGCGTGTAGTTTGGAGGGAAGATGGTGTTCCTCTCATCCAAAGCAAAGAAAACCCCAATGAGTTTCGGTGA 954 0.4308 TSVYISFSMEAQQIISRFCPKSSLAPSIPMVKQPFSLNFPPLHSLSSYPFLQSQNLGVPTGALHAISFVHKEVYPSSRRIWCSKSSSSSTAEPEEDHEVRAQVTVTRKKLAVFVSGGGSNFRSIHEASKRGSLHGDVTVLVTNKRDCGGAQYARNNGIPVILFPKAKDEPEGLSPSDLVDTLRKFEVDFVLLAGYLKLIPVELIRAYERSIFNIHPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAAREHQLYVEVVEALCEERVVWREDGVPLIQSKENPNEFR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03382 317 SUPERFAMILY Formyltransferase 108 306 IPR036477 GO:0009058
Vimu6g03382 317 FunFam phosphoribosylglycinamide formyltransferase, chloroplastic 93 315 - -
Vimu6g03382 317 CDD FMT_core_GART 109 292 IPR004607 GO:0004644|GO:0006189
Vimu6g03382 317 Hamap Phosphoribosylglycinamide formyltransferase [purN]. 109 295 IPR004607 GO:0004644|GO:0006189
Vimu6g03382 317 PANTHER PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 107 315 - -
Vimu6g03382 317 PIRSF FormyFH4_hydr 9 309 - -
Vimu6g03382 317 Gene3D - 87 315 - -
Vimu6g03382 317 ProSitePatterns Phosphoribosylglycinamide formyltransferase active site. 245 268 IPR001555 -
Vimu6g03382 317 NCBIfam phosphoribosylglycinamide formyltransferase 108 297 IPR004607 GO:0004644|GO:0006189
Vimu6g03382 317 Pfam Formyl transferase 108 287 IPR002376 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03382 Vimu-Chr6 30435547 30438776 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03382 K00601 - gmx:548052 499.975