Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03295 ATGTCGTTTAAGAGATCAAAATCAGGAACTGAAAGAACTCTATCTACTGAAGAGGAGCAGATGAAGGTTCTAGAAGTCAAAAAGATGATCGGTCCAATTGCTGAGAAGTGCTCAGTTCTGTGCTCGGATGCATCAATTTTAAGATACCTTAGAGCGCGCAGTTATAATACTAAGAAGACTGCAAAGATGTTGATAGGCACCATAAAATGGAGGCTGGAGTTCAAGCCTGAGAAGATTCAATGGGGTGATATTGGTCAAGAAGCTGAGAGAGGAAGACTGTATAAAGCTGATTACTTGGACAAGCAAGGAAGGATTGTTTTTGTTATTAGACCTGGTATTCAGAATGCCATATGGAATCTAGGTTCCAATCAAGAGCAGATGGTTTGGCTCATTGATTTTCAAGGGTGGAACACAGCATGCTTGTCTATGAAGGTTGCACGAGACACTGCTCAAATCCTGCAGGCTCATTACCCGGAGAGGTTGGGCATTGCAATTTTTTACAATCCACCAAAAGTGTTTGAGTCATTTTGGACGATGGTGAAACCATTTCTAGAACCCAAGACTCACAAAAAGGTGATATTTGTTTACCCTCATAACCCAAGAAGCTGCTCGGTGATGGAAGAACACCTTGACATGGACAAGGTGGAATCCTATTTTGGTGGGAAAAATACAGTTGGATTCAACTATGAAGCTTATGCTCGGAAAATGAAAGCAGATGAGAGTACCATGTCTCGTGTATTTGATTCATGTTGTTCATCATCGCCCGGACTTTTAGACTCAAAATCTCTCGAACTAGTGCAGTCAGTTACCAGTGCTTCTGTGGGTGAAGCAGCATCTTGGGAGAAAGCAATTTGTCCAAACTTGGAAGATGATGATGTTAGTACAAATGGAAAGAAAACTTGCTCCCAGTATGAATCTAATAAGGTCAATGAACCAAAAAAGACATAA 948 0.4103 MSFKRSKSGTERTLSTEEEQMKVLEVKKMIGPIAEKCSVLCSDASILRYLRARSYNTKKTAKMLIGTIKWRLEFKPEKIQWGDIGQEAERGRLYKADYLDKQGRIVFVIRPGIQNAIWNLGSNQEQMVWLIDFQGWNTACLSMKVARDTAQILQAHYPERLGIAIFYNPPKVFESFWTMVKPFLEPKTHKKVIFVYPHNPRSCSVMEEHLDMDKVESYFGGKNTVGFNYEAYARKMKADESTMSRVFDSCCSSSPGLLDSKSLELVQSVTSASVGEAASWEKAICPNLEDDDVSTNGKKTCSQYESNKVNEPKKT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03295 315 PANTHER GH16843P 10 246 - -
Vimu6g03295 315 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 130 227 IPR001251 -
Vimu6g03295 315 SMART sec14_4 87 224 IPR001251 -
Vimu6g03295 315 Pfam CRAL/TRIO domain 123 221 IPR001251 -
Vimu6g03295 315 SUPERFAMILY CRAL/TRIO N-terminal domain 16 83 IPR036273 -
Vimu6g03295 315 Gene3D - 116 254 IPR036865 -
Vimu6g03295 315 Gene3D - 3 115 IPR036865 -
Vimu6g03295 315 SUPERFAMILY CRAL/TRIO domain 88 237 IPR036865 -
Vimu6g03295 315 CDD SEC14 98 222 IPR001251 -
Vimu6g03295 315 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vimu6g03295 315 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03295 Vimu-Chr6 29484503 29487049 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03295 K26544 - gmx:100813778 437.958