Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03250 ATGAATGTATATGAGTCTCGTAGCAATATGGATTTTATTACAGGTCTAGAGGGTGATGCATCTGGTAGATCCAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTCACTGGTGTCAGTCGTGTGACTGTCAAGAAGAGCAAGAATATCCTTTTTGTTATCTCAAAACCGGATGTTTTCAAAAGTCCAACTTCTGACACATACATTATATTCGGCGAAGCAAAGATTGAAGACTTGAGTTCACAGCTACAGACTCAAGCAGCAGAACAATTCAAGGCTCCTAATGTGAGCAATGTAGGACTGAAGCCAGAAACCTCTGCTACTGCTCAAGATGATGAAGCTGTGGACGAGTCTGGTGTAGATTCCAAAGATATTGAGTTAGTGATGACTCAAGCCGGTGTGGTAAGATCAAGAGCTGTTAAGGCCCTCAAAGCTGCCAATGGCGATATTGTTGCTGCCATTATGGAGCTAACTAATTGA 507 0.426 MNVYESRSNMDFITGLEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNVSNVGLKPETSATAQDDEAVDESGVDSKDIELVMTQAGVVRSRAVKALKAANGDIVAAIMELTN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03250 168 PIRSF NAC_alpha 3 168 IPR016641 GO:0005854
Vimu6g03250 168 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 19 167 IPR016641 GO:0005854
Vimu6g03250 168 MobiDBLite consensus disorder prediction 107 127 - -
Vimu6g03250 168 Pfam NAC domain 30 85 IPR002715 -
Vimu6g03250 168 CDD NAC_NACA 41 88 - -
Vimu6g03250 168 SMART NAC_2 30 86 IPR002715 -
Vimu6g03250 168 ProSiteProfiles NAC A/B domain profile. 27 92 IPR002715 -
Vimu6g03250 168 Gene3D - 36 89 IPR038187 -
Vimu6g03250 168 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 37 89 - -
Vimu6g03250 168 CDD UBA_NAC_euk 131 167 - -
Vimu6g03250 168 Pfam HYPK UBA domain 129 167 IPR044034 -
Vimu6g03250 168 Gene3D - 129 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03250 Vimu-Chr6 29083262 29083870 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03250 K03626 - gmx:100791446 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03250 6 29083262 29083870 Vimu6g03250 6 29083262 29083870 ECH