Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03249 GAAGAGTATGTGCTTGATGAAGATGATTATGAGTTGCTGGAGGACAACAATATAAATATTCATCGTCGGAAGGAGAGCAAAAAGTTTAAGCGACTGAAAAAAGGCCGGAGGGACACCGAAGAGGAGCCTTCTGGGCTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGGACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAAGGAGAGGAAGAAGAGGATGCTGACATAGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAACGGAGCTCCTATGAGGCAGAGGAAGCTGAAGAAGAAGAAAACTAGGCAGGCTCCAGGAGTTTCTTCCTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTTGAAATGAGTGAATACAGAGAGACCAGACTTGAAGATGAATTTGAGCCTATTGTTCTGTCTGAGAAATATATGACAGAGCAGGATGACCAAATTAGGGAGCTTGATATTCCAGAGAGAATGCAGATATCAGATGAAAGTACTGGTGCCCCACCATCGGATAGAAGTAGTATAGAAGAAGAGAGTCAATGGATAGTTAATCAACTTGGTAATGGAGCTGTCCCTTGGATTTACAAGAAGGTGCCAAACTCCCAAAATAATGAAAAGGATGACCTACCGATAAACAAGGATGATATTAACAGATTTTTGGAATTGCATCACGTGCAAAAGTTAGATATCCCTTTTATTGCTATGTATCGGAAGGAGGAATGCTTAAGCCTATTAAAAGACCTGGAGCAACCTGAAGCTGTTGACGAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTTCTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGAGGAAGAGTGCCCTCAAGTTATATTATAATAAACGGTTTGAAGAAGAGTCACGTCGTGTGTATGATGAAACGAGACTAAACTTGAATAGTCAATTGTTTGAATCAGTCATGAGTTCACTGAAGGAAGCAGAGTCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCGAGCAGGTTCGGGTGTAGTCCTGAGCAACTTGGATTTTGTCTAACTGATGTTAAACCGCAAGAGTTGGAAGATCCAAAGGAAACACCTGAGGAGATGGCTTCTAACTTCACGTGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCATATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCCACTTTCTTGACCATGCGGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAGCAATAGATTCTTTCCATCAATTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCATTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATTCAGAAGGCAGAAGAGGAGAAACTCATTCAAGTTACTATTAAGTTGCCTGAGGAGTATCTTAATAAGTTGATAGACCAATTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAACGAACAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCGTTGTGGAATAAGGTTTCTGTTGGACCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGAGGAGGCTGCTCCAAGGGTTATGGCATGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTGATGTTAGATTCATCGGGGGAAGTGTTAGATGTGCTTTACACTGGGTCCCTTACTTTTAGGTCACAGAATGTTAGTGACCAACAACGGAAGAAGAATGACCAGGAGCGAGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCTGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTTATTTTTAAGATGGTTGAGGAAAACCCTAGAGATGTCGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCGCAGCAAGGTATAGTTAGGCGGGCTGTTGCACTTGGTCGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGCGGACCCAGAAAGGAAATCTTGTCATGGAAATTGAGCCCATTAGAGAGTTTTCTCAACCAAGATGATAAATTTGCTATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCACCATTGCAATTTGTTTCCGGGCTTGGTCCAAGGAAGGCTGCATCCTTACAGAGATCTTTGGTAAGGGCTGGTGCCATTTTTACACGGAAGGACTTTGTCACAGAACACAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTGGCAGCTAGCAGCAGCCAATTTATTGATTTACTAGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTATATGAAGAAGATGGTACAGGTGATGCAAATGATGATGATGATGCATTGGAGATGGCCATAGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGAAAAAATCGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTAATTCAAGGGTTTCAGGATTGGCGCAATCAATATGAAGAACCAAGTCAGGATGAAGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGAAAAATTGTCCAAGTCACAGTTAGAAGAGTACAGGCTCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATTCTCATGAAGGAAGACTACACAGATGACTGGAGAGATGTAATTGAATTATCTGATAGGCTGCATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATTCAAAAGAATAGATATCAAGTCTTCCTTGTTTGTAAGGACAGTGAAATGCGAAGTAATCGGTTACAGAATAACCGGGACATTGACCCCTATTACCATGAAGATCGGAGCTGCTTTCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAACTTGCTAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGATGGAGTATATGCCCATAAGGATATAGTCGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTATTGCGAATTGGGAAGACACTAAAAATTGGAGACGACACTTTTGAGGACTTAGATGAGGTAATGGACCGATATGTAGATCCATTGGTGGCTTACTTAAAGACAATGCTAAACTATCGCAAATTTCGAAAGGGTACAAAATCAGAAGTTGATGAACTTTTGAGGATCGAGAAAGCTGAGTATCCTACGCGCATTGTCTATAGTTTTGGCATCTCCCACGAGCATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCACGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATTGATCGGCTTGTGGCATACTTTCAAAGGCATATTGATGACCCCCAGCACGATTCAGCCCCCTCCATTAGATCGGTTGCTGCTATGGTACCAATGCGTAGCCCTGCAACTGGTGGCTCGTCTGGGCCATCTGTGGGCAGTGGCTGGGGTGGTGGTTCAAACAGTGAGGGTGGTAGGAGAGGTCACTCTTATGATAGGGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGTGGTGAATATAGAAACAATGGGAATCAGGACGAACATCCAAGTGGGGTGCCTCGTCCATATGGTGGTGGTCGAGGACGTGGTCGCGGTCGAGGTTCTTATAACAACAGAGGACACAATTCCAACAATGAAAGGCAGGACTCTAGTTATGGGGGCGGCAGCAGGTGGGGTTCTAATAACACAAAGGATTCAGATGATGGTTTAAACAGTTTTCCAGGGGCCAAAGTTCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGTAAGTGGTGGTTGGGGAGGTGGAAGCGGTGGCTCTAATAACAATGACAATAGTGTCTGGGGACAAGAGATTGGTGGTGGTAGTGGTCCAAGTGATGGTGATCAAGGAAGCTCTGGCTGGGGAACTGCCCCCAAGAAAGCAGCAGCTGGGAACGGATGGGGGTCTGGAAATTCTGGTGGTTGGTGA 4692 0.4312 EEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEYRETRLEDEFEPIVLSEKYMTEQDDQIRELDIPERMQISDESTGAPPSDRSSIEEESQWIVNQLGNGAVPWIYKKVPNSQNNEKDDLPINKDDINRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQPEAVDENDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALKLYYNKRFEEESRRVYDETRLNLNSQLFESVMSSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGFCLTDVKPQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRTHFLDHAVVSTCPTADGNTAIDSFHQFAGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDEEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTFRSQNVSDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNQDDKFAMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFVSGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKNRQNKIQTFYDIKRELIQGFQDWRNQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVAYLKTMLNYRKFRKGTKSEVDELLRIEKAEYPTRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPATGGSSGPSVGSGWGGGSNSEGGRRGHSYDRDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGSYNNRGHNSNNERQDSSYGGGSRWGSNNTKDSDDGLNSFPGAKVQNSPGREAFPGGWGGVSGGWGGGSGGSNNNDNSVWGQEIGGGSGPSDGDQGSSGWGTAPKKAAAGNGWGSGNSGGW 1563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 1366 1563 - -
Vimu6g03249 1563 Pfam HHH domain 926 1013 IPR041692 -
Vimu6g03249 1563 SUPERFAMILY RuvA domain 2-like 822 912 IPR010994 -
Vimu6g03249 1563 Gene3D - 408 844 IPR023323 -
Vimu6g03249 1563 Gene3D - 641 1031 IPR037027 GO:0006139
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 77 113 - -
Vimu6g03249 1563 Pfam Acidic N-terminal SPT6 2 38 IPR028083 -
Vimu6g03249 1563 Gene3D - 920 1012 IPR042066 -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 188 221 - -
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 641 810 - -
Vimu6g03249 1563 CDD SH2_Cterm_SPT6_like 1260 1346 IPR035018 -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 27 145 - -
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 209 396 - -
Vimu6g03249 1563 SUPERFAMILY Tex N-terminal region-like 250 630 - -
Vimu6g03249 1563 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 2 1444 IPR017072 GO:0032968
Vimu6g03249 1563 ProSiteProfiles S1 domain profile. 1039 1110 IPR003029 GO:0003676
Vimu6g03249 1563 Gene3D SH2 domain 1147 1258 IPR036860 -
Vimu6g03249 1563 SUPERFAMILY RuvA domain 2-like 925 1014 IPR010994 -
Vimu6g03249 1563 Gene3D - 176 914 - -
Vimu6g03249 1563 Gene3D - 1032 1120 IPR012340 -
Vimu6g03249 1563 Pfam SH2 domain 1128 1345 IPR035420 -
Vimu6g03249 1563 CDD SH2_Nterm_SPT6_like 1161 1249 IPR035019 -
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 399 658 - -
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 1259 1352 - -
Vimu6g03249 1563 PIRSF Spt6 1 1417 IPR017072 GO:0032968
Vimu6g03249 1563 Gene3D - 209 407 IPR023319 -
Vimu6g03249 1563 Gene3D SH2 domain 1259 1355 IPR036860 -
Vimu6g03249 1563 SMART S1_6 1037 1110 IPR022967 -
Vimu6g03249 1563 Pfam Helix-hairpin-helix motif 810 911 IPR032706 -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 1371 1385 - -
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 816 914 - -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 188 202 - -
Vimu6g03249 1563 FunFam Transcription elongation factor Spt6 918 1012 - -
Vimu6g03249 1563 SUPERFAMILY Ribonuclease H-like 651 806 IPR012337 -
Vimu6g03249 1563 SUPERFAMILY SH2 domain 1164 1250 IPR036860 -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 1445 1487 - -
Vimu6g03249 1563 SMART rnase_8s 651 769 IPR006641 GO:0006139
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 1147 1258 - -
Vimu6g03249 1563 FunFam Transcription elongation factor spt6 1032 1120 - -
Vimu6g03249 1563 Pfam Holliday-junction resolvase-like of SPT6 650 806 IPR028231 -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 53 75 - -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 207 221 - -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 1509 1526 - -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 1393 1407 - -
Vimu6g03249 1563 MobiDBLite consensus disorder prediction 1408 1424 - -
Vimu6g03249 1563 SUPERFAMILY Nucleic acid-binding proteins 1034 1114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03249 Vimu-Chr6 29073487 29080780 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03249 K11292 - gmx:100808591 2757.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03249 6 29073487 29080780 Vimu6g03249 6 29073487 29080780 ECH