Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03234 ATGTACCTTTCCCTGCCACTCCAATCCTCCACTGCCAGTAGAACCATGACAGTGACAGTCTTTGCTTGTGATGGGGCTGCCCTTCCTTCTCCTTGTACAGTAACTGTCCCTAAGCAGGGACGAATCAAGGATCTCATCCAGGCACTTAGTAATGCCTGCTCGTTGAAGCACAACGAGAGGCTATTGCTTGTGGAGGTACGAAACCATTTGATCCATAGATATTTGGAAGATCCTGTTCATTTGTCTACTATTAAAGACGATGAGCGTCTTGCTGCTTACAAGATTCCAAAGATAGACAAGAACACAAAGTATCTTCAGTTGATACATCGCCGAAGAGAGCATTTTGGGATTTGGGAAAACAGTGTCATGTTTAATAACCACAATAAGTCGCGTGGCCATGATATCGTGTCGAGCAGTGACTCACATGTCATATCTGGATGGAAACCGTATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTAATGGTTAATCGTATTCTTTCCCCTCTGCTAAGGAGAGGTGGTAATGTAGAACAAGCTACTAATTCTGAAGCAAGCATCCCAAAAGCAGAACCTGATGAATGCAGTAATACTCATGATGCTGCAAGTGTTGGCAACGTGGTGTCAAATTCATCAAATAAGGATTTTACCAATTCAAAGGCACCATCAATGCCAACGCTACCTCTTCTCTTGGTTGGTGATAACAATGCTTGCATTGATCTTTCAATGGGCGAGGAGAAAGTGGTTAAACTGCCTCAATCATCTCCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCAATTGAGAGTTTGCCTGAAGTTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGGGAAGAACCTCTGGTGCCTGAAGATATGTGGTCAATGAAGCATAAACTGGAGACTTTTGTCAACTTTCCCATTCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGCCGGCAACTGTACGAACTGTATGCCCTTACAAATCATTATGGTAGCATGGGTAGCGGGCATTACACTGCACATATCAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATAACACTGATAAGTGAAGATGAGGTTAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACCGAGGAAGCAGCCATTAGCAATGGAGCCTAG 1299 0.4249 MYLSLPLQSSTASRTMTVTVFACDGAALPSPCTVTVPKQGRIKDLIQALSNACSLKHNERLLLVEVRNHLIHRYLEDPVHLSTIKDDERLAAYKIPKIDKNTKYLQLIHRRREHFGIWENSVMFNNHNKSRGHDIVSSSDSHVISGWKPYGTPIVSLISCDDTVTRGDIQVMVNRILSPLLRRGGNVEQATNSEASIPKAEPDECSNTHDAASVGNVVSNSSNKDFTNSKAPSMPTLPLLLVGDNNACIDLSMGEEKVVKLPQSSPKVLVYIDWSQKLLEKYDTHPIESLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHITLISEDEVNTAAAYVLFYRRVKTEEAAISNGA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03234 432 Pfam Ubiquitin carboxyl-terminal hydrolase 208 418 IPR001394 GO:0004843|GO:0016579
Vimu6g03234 432 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 330 - -
Vimu6g03234 432 Gene3D Cysteine proteinases 326 429 - -
Vimu6g03234 432 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 363 380 IPR018200 GO:0004843|GO:0006511
Vimu6g03234 432 Pfam Ubiquitin-specific protease C-terminal 3 103 IPR029346 -
Vimu6g03234 432 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 421 IPR028889 -
Vimu6g03234 432 SUPERFAMILY Cysteine proteinases 306 422 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03234 Vimu-Chr6 28921546 28925399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03234 334 422 Miscellaneous Gene Families AT2G24640 32.609 4.69e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03234 - - gmx:100794067 688.723