Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03233 ATGATGGAGGTGTCGGTGGGTGGCAGCAGTGTCTCTGAGCTGAGTCCGGACGAGGAGAGGATCATGATCAAAGACATTGCTCTCGCTGCCCAGACTAACAGCAAAGAAGGAGACACCTTCTTCTTAATCACTCAGAGGTTCTTCCTTCTTCTTTCCCTCACTTTTGCAACTGGGGTGATTGAGCTGCTTCAATGTTACCCTTATGAACTTAGGAGGTATTGGGTCAAGCAGTTGTTTGCTGCTGATTGTACAACGAAGACTTATTCGAATCCCTTGGTTGCATTTTTGCTTGGACTTGTATCTTATCGTTACCAGTCAAACACTTCATATGATGGATCTTCCTTATCTGAACATGATCTGGCCAACTCAAGTGCTTTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATTGATGATACTGTGTCAGAAGACTCTGGTATGGGTATTGAGATTCATGATACTCTTCTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTTTGGGATCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCAGGTTTTTCTCAGACTGAATTGGCGGTAGAGGTGTATCCTTTGCGGCTTCAATTACTTATGTTGCCAAAAAATGACCGTTTTGCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGAAAAGCTTGTGAAATATTTGATCTTCCGCCAGACCAAGTGTGTATATGGGATTACTATTCCCGTCGGAAGCATGCTTTGATGAATGACATGGACAAAACTCTCGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAACAATTCAAACAACACAAGTTTTGCTCAAGAAAATGGTTCTGCACTGAGGGAGGCGAACTTTGCTCTTGTGGAACCTCCAAAGTCGAGCTTATCAATTGCCGGTGGCTTATCTGCTAGTAAAGGTGCATCTAGAGGCTACAACACAGACCTTTCTTCAGCTCTAAACCCAAATTCTCCACTCAGAGACGTCGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTAACTGGGTTGCTGAATCTTGGCAATACCTGTTACATGAATAGTGCAATACAATGCCTTGTTCATACACCAGAGTTTGCTAGATACTTCAGGGAAGACTATCATCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTAGGTCTGATAGGAAATTCCTCACAGTAAATTCTGGTGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAGCTATGGGCACCTGGACGTACCCCAATTGCTCCTCGGCCCTTTAAAACAAAGCTTGTTCGCTTTGCTCCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGAGCTTTTGGCATTTCTTCTTGATGGTCTTCACGAAGACTTGAATCGAGTAAAACACAAACCATATATAAAGTCTCGAGATGCTGATGGCAGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTTCTCGTAATGATTCCATAATTGTTGATGTATGCCAGTTGGTAAAGCTCCCTCCACCTGATGGTCTCCTACAACTACCATCCTTTTGCTATTATTCAAATCATGATATGCTCCTTCTTGGCAAAGCTGCTGCAATATCTCCACTTGTTCAGAAAAAAATTCATTTTTGTGGCTTTCCTTCCTCAAAAGCATCTGATAGTCCGCTAACTGGTTGTCTTTGGCAGCCTTTAGCGAAGCGAGCTCGACTTGCAATTCGTTGA 1797 0.4257 MMEVSVGGSSVSELSPDEERIMIKDIALAAQTNSKEGDTFFLITQRFFLLLSLTFATGVIELLQCYPYELRRYWVKQLFAADCTTKTYSNPLVAFLLGLVSYRYQSNTSYDGSSLSEHDLANSSALKRPAGIDNSDLIDDTVSEDSGMGIEIHDTLLEGRDYVLLPQEVWDQLFRWYGGGPTLARKVISSGFSQTELAVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHRKACEIFDLPPDQVCIWDYYSRRKHALMNDMDKTLDDANLQMDQDILVEVINNSNNTSFAQENGSALREANFALVEPPKSSLSIAGGLSASKGASRGYNTDLSSALNPNSPLRDVENPYGTSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVRSDRKFLTVNSGELALAFGELLRKLWAPGRTPIAPRPFKTKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHISRNDSIIVDVCQLVKLPPPDGLLQLPSFCYYSNHDMLLLGKAAAISPLVQKKIHFCGFPSSKASDSPLTGCLWQPLAKRARLAIR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03233 598 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 366 381 IPR018200 GO:0004843|GO:0006511
Vimu6g03233 598 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 365 598 IPR028889 -
Vimu6g03233 598 SUPERFAMILY Ubiquitin-like 213 284 IPR029071 -
Vimu6g03233 598 Gene3D Cysteine proteinases 355 529 - -
Vimu6g03233 598 Pfam Ubiquitin carboxyl-terminal hydrolase 365 525 IPR001394 GO:0004843|GO:0016579
Vimu6g03233 598 SUPERFAMILY Cysteine proteinases 363 525 IPR038765 -
Vimu6g03233 598 SUPERFAMILY DUSP-like 15 188 IPR035927 -
Vimu6g03233 598 ProSiteProfiles DUSP domain profile. 14 188 IPR006615 GO:0004843
Vimu6g03233 598 Gene3D - 5 201 IPR035927 -
Vimu6g03233 598 Gene3D - 202 289 - -
Vimu6g03233 598 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 294 525 - -
Vimu6g03233 598 Pfam DUSP domain 114 188 IPR006615 GO:0004843
Vimu6g03233 598 SMART dusp 33 191 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03233 Vimu-Chr6 28908323 28915906 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03233 - - pvu:PHAVU_001G118800g 847.425