Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03228 ATGGCAACCTTTCCATTCACTTCCCTTTTCCCACTCACACTCTCATCTCCATCTTCATCTTCCAAGCTCTCGACTTTGCATGCTTTCAGAGCATCAACTTCCGAGTATGTTTCCTCCCAGCACACACCCAGAAGGGAATTCTTGAAGGGTCTTGCTTTGATGCCTCTTCCTCTTGTTGTGCTGAGAGAGCCACCCCCTTCACATGCTCGAGAAGTTGAGGTTGGATCCTTCCTCCCACCCTCACCCTCTGACCCTTCTTTCGTTCTCTTCACCGCCTCTCCCAAGGACACTCCCGCCCTTCGAGCAGGAAATGTGCAGCCATACAAGTTTCTCCTCCCCCCAACTTGGAAACAGGCTCGTGTAGCAAACATATTATCTGGAAATTACTGTCAGCCAAAGTGTGCAGAGCCATGGGTGGAGGTTAAGTTTGAAGATGAAAAACAGGGAAAGGTTCAGGTAGTGGCTTCCCCTTTGATACGCCTTACCAACAAACCGAATGCAACAATTGAAGACATTGGTAGCCCAGAAAAACTGATTGCTTCTCTTGGCCCTTTTGTCACTGGAAACACATTTGATCCAGAAGAGCTCCTTGAGACTTCAGTAGAAAAGCTTGGTGATCAGACGTACTACAAATATGTGCTTGAAACTCCATATGCACTAACTGGGACACACAATCTTGCGAAAGCAACAGCAAAGGGAAACACTGTTGTTCTGTTTGTGGTCAGTGCCAATGACAAGCAGTGGCAAACTTCTGAAGAGACTCTAAAGACCGTGCTTGATTCCTTCCAAGTTTAG 795 0.4717 MATFPFTSLFPLTLSSPSSSSKLSTLHAFRASTSEYVSSQHTPRREFLKGLALMPLPLVVLREPPPSHAREVEVGSFLPPSPSDPSFVLFTASPKDTPALRAGNVQPYKFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELLETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKTVLDSFQV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03228 264 SUPERFAMILY Mog1p/PsbP-like 103 264 IPR016123 -
Vimu6g03228 264 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 86 264 - -
Vimu6g03228 264 PANTHER - 21 264 - -
Vimu6g03228 264 Pfam PsbP 107 264 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03228 Vimu-Chr6 28847454 28850021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03228 - - pvu:PHAVU_001G1191000 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03228 6 28847454 28850021 Vimu6g03228 6 28847454 28850021 ECH