Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03224 ATGGATTCGTCTTGTCTCTCCAACGATTCGGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTAGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTTACCATTTTGCGGATGGAGCTGGACATTCAGAGGTTTATGAATAATGTTGATCAACAGCATTTTGAGTTTCCACATTTCCCGTCTTCCTATCTCAGATTGGCTGCACATCGTGTTGCTCAACACTACAGCATGCAAACAATGGTTCAAGATATTGGCTTAGATGGTCAGGGAAGTAAAATTCTCGTGAGAAAGTTACCAGAGAGCAAGTATCCCATGGTTAAGTTATCTGAAATACCAGCAAAGCAATTGGAAAATGATAAATCTGAGCTGAAAAAAATTGTTATTAGACCTAGGCCTAATAAAAACCATTTGAATGATGCTAATGGAGTTGGGATGAAAGGAAATCCTGTAAGAAGTGTGGAAGAGAGGAAGGAAGAATATGACAGAGCACGAGCTCGTATCTTTAGTAGCTCTAGAATCCCTGACTCTGGTGATATCTCATCTATGGTTCCAATGGATGGGAGAAATTCTTCAAGTAGCAAGGATGAGAGTGAAACTAGCAAGAACCCCGTGGCTGCTGATTCAGAAAGATTTATCAGTGTCAGGGATATTTGTTCGAATCGAGTTGCCATATTCAGGGATAGGGAAAAGGACCGTAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCCAGGAGTATTCCAACCTCTGCTGTTAACTTGGTGCCATTTAACTTGCTAAAAGTTCAACCTTCATTTGCTCAATATGACGCTACATTTAATCATTTGGGTCAGATGTCACAAACTCAGGCCACACATGGCTATGCTCCTTCTACCCCCATAATGAATCCTTTTTGCACCACAGGATTGAATCAGACACCTACTGACGGTGCTTACATACAGTGGCCTAGTGCTACTATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTTCCAGGCTCCATTTGGTCAACAGCCTTTGAGCTTTGACTATTCGCAGAACTATTAG 1068 0.4204 MDSSCLSNDSVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQRFMNNVDQQHFEFPHFPSSYLRLAAHRVAQHYSMQTMVQDIGLDGQGSKILVRKLPESKYPMVKLSEIPAKQLENDKSELKKIVIRPRPNKNHLNDANGVGMKGNPVRSVEERKEEYDRARARIFSSSRIPDSGDISSMVPMDGRNSSSSKDESETSKNPVAADSERFISVRDICSNRVAIFRDREKDRSDPDYDRSYGRYARSIPTSAVNLVPFNLLKVQPSFAQYDATFNHLGQMSQTQATHGYAPSTPIMNPFCTTGLNQTPTDGAYIQWPSATMMYAHSYDQFRHAVFQAPFGQQPLSFDYSQNY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03224 355 MobiDBLite consensus disorder prediction 174 209 - -
Vimu6g03224 355 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 17 342 - -
Vimu6g03224 355 MobiDBLite consensus disorder prediction 133 161 - -
Vimu6g03224 355 Pfam R3H domain 37 86 IPR001374 GO:0003676
Vimu6g03224 355 ProSiteProfiles R3H domain profile. 35 102 IPR001374 GO:0003676
Vimu6g03224 355 Pfam SUZ domain 127 174 IPR024771 -
Vimu6g03224 355 SUPERFAMILY R3H domain 8 136 IPR036867 GO:0003676
Vimu6g03224 355 Gene3D - 11 135 IPR036867 GO:0003676
Vimu6g03224 355 MobiDBLite consensus disorder prediction 176 193 - -
Vimu6g03224 355 SMART R3H_4 19 101 IPR001374 GO:0003676
Vimu6g03224 355 CDD R3H_encore_like 34 100 - -
Vimu6g03224 355 ProSiteProfiles SUZ domain profile. 105 175 IPR024771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03224 Vimu-Chr6 28823306 28825796 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03224 - - gmx:100814835 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03224 6 28823306 28825796 Vimu6g03224 6 28823306 28825796 ECH