Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03211 ATGCTACCTCAGTCATTTACTATGATTGCAACTATAGTTTTTGTTCTAATACAGACATTTCTGGGTGTGAATTCATTTCCTGAATCTGATAAAATAAGCAATTTGCCCGGGCAACCTCAGGTCAATTTTCAGCAATTTTCTGGCCACATTACTGTGGATGATCAGCACCAGAGAGCTTTGTTTTATTACTTTGCTGAAGCAGAAGAAGACCCTGCTTCCAAGCCATTAGTCCTGTGGTTGAATGGAGGGCCTGGTTGTTCATCGATTGGAGTTGGAGCTTTTGCTGAGCATGGCCCTTTCAGACCGAGTGACAACAATGTTCTTGAGAAAAATTATTATAGTTGGAACAAAGAGGCAAATGTGCTATACTTGGAGTCACCAGCTGGTGTTGGATTCTCTTACTCTAGCAATAAATCGTTCTATGTTTTAGTGACAGATGAAATTACAGCTAGGGATAATCTTGTGTTCCTACAGCGTTGGTTCACTAAATTTCCTGAGTACTCTAATAACGACTTCTTCATTACTGGGGAGAGCTATGGAGGTCACTATGTTCCACAACTTGCACAGCTTATTGTTCAAACCAAGACCAACTTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTCTGGAGTTCAATACTGATTTCAACGCCAGATCTGAGTATTTTTGGTCTCACGGGCTGATATCAGATTCAACATTGGAAATCCTAACCAAAGTCTGCAACTATTCCTCAATTAGGAGACAGCGTCAAAATGGGAATCTAGAAGAGGTTTGTGCAAAAGCAAGCAAGCAATTGTATGATGAGGTTAGCGACTATGTAGATGAGTATGATGTCACTCTTGATGTTTGTTTGTCATCAGTAAATCAACAGGCTTATGTGCTTAATCAACTGCAAGAGACACAAAAGATAGATGTTTGTGTTGGTGATAAAACGACCACGTACTTGAACAGGAAAGAAGTCCAAGAAGCTCTACATGCTAAACTTTTTGTAAGTTCTGTTGATTCAAAGATGACAGATCCCATTAGTGCTATAGAGATGCAAATATTTATGATCAGAAAAAATAGAAAAACTTCACCTCTGCTAACAATATCTTCCTTGTGTCACAGAGTTCTGCATTATGACTACAGGAATCTAGAAATACCAACAATTCCTATCCTAGGGTCACTTGTTAAGTCTGGCATCAGGGTTCTGGTATACAGTGGTGATCAAGACTCAGTGATTCCATTAACAAGTTCGAGATATCTAGTGAATGGATTAGCCAAGGAAATTGGACTTGAGACCACAGTGGCTTATAGAGCCTGGTTTGAGGAAAAACAGGTAGCAGGATGGACACAAACATATGGGGACATCTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTACTCAACCTCAAAGATCACTACTGCTACTAAAAACATTTCTAGAAGGAAAGCAACTGCCTAGTGTTAAATGA 1470 0.398 MLPQSFTMIATIVFVLIQTFLGVNSFPESDKISNLPGQPQVNFQQFSGHITVDDQHQRALFYYFAEAEEDPASKPLVLWLNGGPGCSSIGVGAFAEHGPFRPSDNNVLEKNYYSWNKEANVLYLESPAGVGFSYSSNKSFYVLVTDEITARDNLVFLQRWFTKFPEYSNNDFFITGESYGGHYVPQLAQLIVQTKTNFNLKGIAIGNPLLEFNTDFNARSEYFWSHGLISDSTLEILTKVCNYSSIRRQRQNGNLEEVCAKASKQLYDEVSDYVDEYDVTLDVCLSSVNQQAYVLNQLQETQKIDVCVGDKTTTYLNRKEVQEALHAKLFVSSVDSKMTDPISAIEMQIFMIRKNRKTSPLLTISSLCHRVLHYDYRNLEIPTIPILGSLVKSGIRVLVYSGDQDSVIPLTSSRYLVNGLAKEIGLETTVAYRAWFEEKQVAGWTQTYGDILSYATIRGASHEAPFTQPQRSLLLLKTFLEGKQLPSVK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03211 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 469 IPR001563 GO:0004185|GO:0006508
Vimu6g03211 489 FunFam Carboxypeptidase 27 286 - -
Vimu6g03211 489 Pfam Serine carboxypeptidase 36 482 IPR001563 GO:0004185|GO:0006508
Vimu6g03211 489 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vimu6g03211 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vimu6g03211 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vimu6g03211 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Vimu6g03211 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vimu6g03211 489 Gene3D - 307 338 - -
Vimu6g03211 489 FunFam Carboxypeptidase 383 482 - -
Vimu6g03211 489 Gene3D alpha/beta hydrolase 27 286 IPR029058 -
Vimu6g03211 489 SUPERFAMILY alpha/beta-Hydrolases 33 485 IPR029058 -
Vimu6g03211 489 Gene3D - 383 482 - -
Vimu6g03211 489 ProSitePatterns Serine carboxypeptidases, histidine active site. 452 469 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03211 Vimu-Chr6 28584822 28588188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03211 368 485 Calmodulin-binding Proteins AT2G22960 31.356 2.34e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03211 K16297 - gmx:100799900 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03211 6 28584822 28588188 Vimu6g03211 6 28584822 28588188 ECH