Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03207 ATGGCTATGCATAAGATCCTGCAAAGGGGTCGCCCATTCTTCAATTCTCCTCTGAAACTTGCCTCTTTACCTTCTTCAGCTTCTCACACATTTCTCTCTTCTGGTCATGAATCTCTTCATGTTCGGATAGAAAAAGTATTTGCTTCCACCGATGATCCGGGTAGTGCTGCATCAGCTGCTGCCATTGATCTTGGAGCCGAAAATAATGCTCAACTTTTCCTATCCAACACAGAGCATTCTCTCCCTCAAAAACAGGAATACCCAGCTGCATCCATTTATCAGAATTCTTGTTTCTCAAGAATGCTGTCTCTGTGTTGTCTTCTTGGGTACCTTGATCAATTGCTCTCTAATTCCCAGAATTTGCTGCACTTGCATTCTTCCCACCTCCCTCTTGCACAGATCTTTCCAAAAGCCTCTCCAACCGAGCTATGCAAGAATCTTGTTGAAATAATGGTCATTACTTTAGACAATGTTCTTTACTTTCCCAATTTTGAATGCACTAGGGAAATCAAAAACACAGGAGAAGTTAGGAATGAACTTGGCAAATACCATATAAAAGATTTATCTCAATGCCTCAACTGGACTTCAAGGCCATATTACTGTAGTCATGGCTATGTGGTAAATCGTCATTTTGCATCTGATCACAATGATATATGTACAAAGGGGTTCTCAAGTAAGGTGCAGTTGATCTTAAAGTATATGACTGACACTACAATGCTTCAGCTTCTTAAAACTATTCCATACCATGTAAAGATAGTGGAGGTTGGTGCAAGGGATGGATTGCAAAACGAGAAGGCTATTATTCCTACTAATATAAAAGTTGAGTTAATACAACTACTGGTTTCTTCTGGGTTGTCTGTTGTTGAGGCAACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTGTTGGCAGCAATTCAAAACGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACATTAAAGGTTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTAAATTGTGGCATTGAAGATAATCTTGCCCGTTGCCGTGATATTGCTTCAGCTGCTGGAAGTCTCTCGATCCCAGTTCGCGGATATATATCATGTGTTGTGGGATGTCCCCTGGAAGGAAGTATTGCCCCAGAGAAAGTAGCATATGTGGCAAAATCACTGTATGAGATGGGTTGCGCAGAGATTTCACTGGGTGATACAATTGGTGTTGGCACACCTGGTACTGTAATTCCGATGCTTGAAGCTGTACTTGACGTTGTTCCAACTGACATGGTTGCTGTCCATTTTCACGATACTTACGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGTATCAGCACAGTGGATTCATCTGTTGCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAGGCTTATGCTAGCTGGGGATTTCATTTGCAAACATTTAGGACGTGCATCTGGTTCCAAAGCAGCTACTGCTTTGAGTAAAGTTACTAGTCATGCCTCCAAACTATGA 1650 0.4218 MAMHKILQRGRPFFNSPLKLASLPSSASHTFLSSGHESLHVRIEKVFASTDDPGSAASAAAIDLGAENNAQLFLSNTEHSLPQKQEYPAASIYQNSCFSRMLSLCCLLGYLDQLLSNSQNLLHLHSSHLPLAQIFPKASPTELCKNLVEIMVITLDNVLYFPNFECTREIKNTGEVRNELGKYHIKDLSQCLNWTSRPYYCSHGYVVNRHFASDHNDICTKGFSSKVQLILKYMTDTTMLQLLKTIPYHVKIVEVGARDGLQNEKAIIPTNIKVELIQLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNIKGFEAAVAAGAKEVAVFPAASESFSKANLNCGIEDNLARCRDIASAAGSLSIPVRGYISCVVGCPLEGSIAPEKVAYVAKSLYEMGCAEISLGDTIGVGTPGTVIPMLEAVLDVVPTDMVAVHFHDTYGQALSNILISLQMGISTVDSSVAGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGRLMLAGDFICKHLGRASGSKAATALSKVTSHASKL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03207 549 Gene3D Aldolase class I 244 542 IPR013785 -
Vimu6g03207 549 CDD DRE_TIM_HMGL 252 525 - -
Vimu6g03207 549 ProSitePatterns Hydroxymethylglutaryl-coenzyme A lyase active site. 476 485 IPR000138 GO:0004419
Vimu6g03207 549 ProSiteProfiles Pyruvate carboxyltransferase domain. 250 517 IPR000891 GO:0003824
Vimu6g03207 549 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 239 543 IPR043594 GO:0016833
Vimu6g03207 549 FunFam Hydroxymethylglutaryl-CoA lyase, mitochondrial 244 542 - -
Vimu6g03207 549 SUPERFAMILY Aldolase 245 542 - -
Vimu6g03207 549 Pfam HMGL-like 250 522 IPR000891 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03207 Vimu-Chr6 28542461 28549485 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03207 K01640 - gmx:100801507 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03207 6 28542461 28549485 Vimu6g03207 6 28542461 28549485 ECH