Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03202 ATGAATAATGCTGCTGAAAGGCCACTAAATGGAGACGTAGAGGATGATGACGACGATGATGGTGCAGACCTTGAAGCCTGGGAGAGAACTTACGCAGAAGATAGATCATGGGAGGCTTTGCAGGAGGATGAATCTGGACTTCTTCGCCCCATTGATACTACAGCCATTTACCATGCTCAGTATCGCAGACGCCTTCGTAACCTTGCTGCCACTGCGGCTACTTCACGAATTCAGAAGGGGCTTATACGATACCTGTACATTGTCGTTGACCTGTCTAAGGTACACTTTGTCAATCAAATTGGGAAAGAGGAATTTACTAGGTTTCTTGGATGGCCGTATCACACTCACACCGGTGTTTCTATCTGGTGCTTTATGCCTACGAAGCTGTTAAGAGACTGGTTATGGGCCAAGAAGTATCTTGTTCAACTTGTGATTGATGCAGCATCAGAGAGAGACTTCCGACCAAGTAGGATGGCTGTGATTGGGAAACAGGTTGAGGTATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCACGTTGGTCTGGTGACTATAAAAGATGGGATTGCTAATTGCATAACAGAACTTGGTGGCAGTCCCGAGTCCCACATCAACGCATTAATGGGTAAACTGGAATGCTCAGGTGACGCCTCCTTACAAAATGCACTAGAGCTTGTTCTTGGATGTCTAAATCAAATCCCATCATATGGTCATCGAGAAGCTCTTATCTTATATTCGGCTCTCAGTACGTGTGATCCTGGTGATCTCATGGAAACCATTCAAAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATCGGTCTTGCTGCTGAAATGTTTGTATGTAAACATCTCTGCCAGGAAACTGGCGGGACTTATTCTGTTGCTCTAGACGAGTCCCACTTTAAAGAGTTGATCCTGGAGCACGCACCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGGTCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCTAAGGCTGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGAGTCTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATACCATCATCTATTTCCTATTGTGATGTTTGATGAGGTCTCTCCGTCTCAAAATGATTCTAGCCGCAGTTTTCCTAATACTTGTTTTGGTTGTCAAGAAAGTCTTCTAAGTCAGGGTAAGTTTATTCCTACATTTCCATTTCTGGTGCCTGAAACAAGCCTGGACTTTCTGTCATTTGCCCAAAATGCAAACAACAGTTTTGCCTTGATTGTGACATCTACATTCATGAGAGCTTACATAATTGCCCAGGCTGTGAGAGTTCCAGGCATTCTAAGTCTGTAA 1440 0.4431 MNNAAERPLNGDVEDDDDDDGADLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRNLAATAATSRIQKGLIRYLYIVVDLSKVHFVNQIGKEEFTRFLGWPYHTHTGVSIWCFMPTKLLRDWLWAKKYLVQLVIDAASERDFRPSRMAVIGKQVEVFIREFFDQNPLSHVGLVTIKDGIANCITELGGSPESHINALMGKLECSGDASLQNALELVLGCLNQIPSYGHREALILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVSPSQNDSSRSFPNTCFGCQESLLSQGKFIPTFPFLVPETSLDFLSFAQNANNSFALIVTSTFMRAYIIAQAVRVPGILSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03202 479 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g03202 479 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 17 98 - -
Vimu6g03202 479 SMART VWA_4 138 311 IPR002035 -
Vimu6g03202 479 CDD vWA_transcription_factor_IIH_type 143 315 IPR007198 -
Vimu6g03202 479 PIRSF TFIIH_SSL1 137 452 IPR012170 GO:0000439|GO:0006289|GO:0006351
Vimu6g03202 479 PIRSF TFIIH_SSL1 2 107 IPR012170 GO:0000439|GO:0006289|GO:0006351
Vimu6g03202 479 FunFam General transcription factor IIH subunit 2 137 316 - -
Vimu6g03202 479 NCBIfam transcription factor ssl1 353 420 IPR012170 GO:0000439|GO:0006289|GO:0006351
Vimu6g03202 479 Pfam Ssl1-like 147 331 IPR007198 -
Vimu6g03202 479 SUPERFAMILY vWA-like 154 299 IPR036465 -
Vimu6g03202 479 Gene3D von Willebrand factor, type A domain 78 316 IPR036465 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03202 K03142 - gmx:100803090 677.552