Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03191 ATGTTTGATAGAAACGGGGACGGGCGAATAACGCGGAAGGAGCTGACTGACTCGTTGAAAAACCTGGGAATCTCGATCTCGGAGCCAGACTTGACCCAAATGATCGAGAAAATCGACGTTAATGGAGACGGGTACGTGGACATGGACGAGTTCGGAGAGTTGTACAATGCGATAATGGACGATAAAAACGAGGAGGAGGACATGAGGGAAGCATTCAACGTGTTCGATCAAAATGGAGATGGGTTCATCACAGGAGAGGAATTGGGCGCAGTGTTGTGTTCTTTGGGGCTAAAACATGGGAAAACCATAGATTATTGCATGAGCATGATCAAGAAAGTGGATGTCGATGGCGATGGAATGGTTAACTTCAAAGAGTTTAAGCAAATGATGAAGGAGGGAGGGTTTGGCGCCTCACCTTCGATACTCTGA 429 0.4685 MFDRNGDGRITRKELTDSLKNLGISISEPDLTQMIEKIDVNGDGYVDMDEFGELYNAIMDDKNEEEDMREAFNVFDQNGDGFITGEELGAVLCSLGLKHGKTIDYCMSMIKKVDVDGDGMVNFKEFKQMMKEGGFGASPSIL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03191 142 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Vimu6g03191 142 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Vimu6g03191 142 Gene3D - 92 133 - -
Vimu6g03191 142 ProSiteProfiles EF-hand calcium-binding domain profile. 1 25 IPR002048 GO:0005509
Vimu6g03191 142 CDD EFh 67 131 IPR002048 GO:0005509
Vimu6g03191 142 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
Vimu6g03191 142 ProSitePatterns EF-hand calcium-binding domain. 3 15 IPR018247 -
Vimu6g03191 142 Gene3D - 33 91 - -
Vimu6g03191 142 Pfam EF-hand domain pair 65 131 IPR002048 GO:0005509
Vimu6g03191 142 Pfam EF-hand domain pair 1 55 IPR002048 GO:0005509
Vimu6g03191 142 Gene3D - 1 32 - -
Vimu6g03191 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 66 131 - -
Vimu6g03191 142 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Vimu6g03191 142 SMART efh_1 1 22 IPR002048 GO:0005509
Vimu6g03191 142 SMART efh_1 67 95 IPR002048 GO:0005509
Vimu6g03191 142 SMART efh_1 105 133 IPR002048 GO:0005509
Vimu6g03191 142 SMART efh_1 30 58 IPR002048 GO:0005509
Vimu6g03191 142 FunFam Calmodulin 1 1 132 - -
Vimu6g03191 142 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Vimu6g03191 142 SUPERFAMILY EF-hand 1 130 IPR011992 -
Vimu6g03191 142 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03191 Vimu-Chr6 28368988 28369416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03191 1 142 EF-hand Containing Proteins AT3G07490 73.239 1.74e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03191 K13448 - gmx:100806637 244.973