Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03185 ATGGCGCAAGTTCTTCTGTATCGTCCTCCTCTGCTTCGCTTCATGGCTTCTCGCTTCTTCACCCACTCTTCCTTCCATACGCGTTTTTCTTCTCTCCCTTCTTCTACTCTCACCAAAATAAGGACGAGTTTTCATCTGAGAAAATCTTGGATTCCCTGCTCGGTTTCAATTACTGCTACTCCAAGGGCGTTTATGTCTTCTGTCCCTACCACTGAAGCTTTTCAGAAAAGTGAAAGTTCCACAGCTTATGGTTCTGATCAAATTCAGGTGCTGGAAGGCTTGGACCCTGTGAGGAAAAGGCCCGGGATGTACATTGGAAGCACTGGCCCTCGTGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGGTGGGTTTGCTTCCAGGATTGATGTTGTTTTGCTTGCAGATGGTTCCGTGAGCATCACTGACAATGGTCGTGGGATTCCCACTGACTTGCATCCAGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCACGCTGGTGGAAAATTTGGTGGTGCCAACAGTGGGTACTCTGTCTCAGGAGGTTTGCATGGTGTTGGATTGTCTGTTGTTAATGCCTTGTCTGAGTCACTAGAGATAACAGTTTGGCGTGATGGAATGGAATACACACAAAAATATTCTCGTGGAAAACCAGTGACAATTCTAAAATGCCTTGTGCTTCCAGATGAAAGGAAAGATCATCGAGGGACACGTGTTAGATTTTGGCCCGACAAAGAAGTTTTCACCACTGCTATTGAGTTTGATTATAGCACAATAGCTGGACGGATTAGGGAGTTAGCTTTCCTCAACCCAAAGCTTACAATCACACTTCAGAAAGAGGATAATGATCCAAATAAAGCTCAATATAACAAATATTTTTATGCTGGGGGGTTGGTCGAATATGTGAAATGGCTCAATGCAGATAAGAGTAATGACCCATGCGGGATGACCAATGCTAACTCGGATATGATAGCATTTCACTGTCAGTTATGTGGTGACCCTCCGTTTCAGAAAGCTCTTCACGACGTTCTGAGTTTTAGAAAAGAAACTGATGGCATCACAGTTGATATAGCTTTTCAATGGTGTGAAGATGCATACTCAGATACAATACTGGGATATGCTAATAGTATACGTACTATTGATGGTGGCACTCATATTGAGGCCATGAAGGCTTCTATAACAAGAACGCTGAATGGTCTAGGAAAGAAGTCAAATGTTATTAAGGATAAGGATATTACTTTAAGTGGCGAGCATGTTAGAGAGGGTCTAACTTGTGTAGTCTCAGTCAAGGTCCCAAACCCTGAGTTTGAAGGACAAACAAAGACAAGGTTAGGAAATCCAGAGGTACGAAAAGTGGTTGAACAATCTATTCATGACTATCTTACTGAGTATTTAGAATTGCATCCAGATGTGCTTGATTCGATACTTTCTAAAGCTCTCAATGCTTTTAAGGCAGCTCTGGCAGCAAAAAGAGCGAGAGAATTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGAAAACTAGCTGATTGTTCATCTTCAAATCCTGAAGAATGTGGTATGATGGTCATTGGTGATGTTGATATGTCTAGTGAGGTTGTACAACCTGAGTCTCTGTTTGGGGAACATCTAGGTGCACAACAAGCATATTTGATGCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCAAAAATTTAATTCTCGGGCTTGGTCTTGGCGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGGTATCATAAGATTATTATTTTGACTGATGCTGACGTGGATGGTGCTCACATCCGAACTTTGCTACTGACATTTTTCTTCAGATATCAGAAAGCATTGTTTGATGAAGGTTGTATTTATGTTGGTGTTCCACCATTGTACAAGGTTGTCAGGGGAAAACAAGTGCACTATTGCTATGATGAGGCTGACCTTAAAAAGCTTAAAAAATCGTTTCCTCCTAATGCATCATACAACATGCAACGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAACGGAGGTTACTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAGTGTTGTTTTTTCCTCTCTTATGGGTACTCAGGTGGATATTCGGAAGGAACTCATACGAAATTCTGCAAGCATGATTGATCTTCATCAGCTAGATATTTGA 2292 0.4197 MAQVLLYRPPLLRFMASRFFTHSSFHTRFSSLPSSTLTKIRTSFHLRKSWIPCSVSITATPRAFMSSVPTTEAFQKSESSTAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQGGFASRIDVVLLADGSVSITDNGRGIPTDLHPVTNKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSESLEITVWRDGMEYTQKYSRGKPVTILKCLVLPDERKDHRGTRVRFWPDKEVFTTAIEFDYSTIAGRIRELAFLNPKLTITLQKEDNDPNKAQYNKYFYAGGLVEYVKWLNADKSNDPCGMTNANSDMIAFHCQLCGDPPFQKALHDVLSFRKETDGITVDIAFQWCEDAYSDTILGYANSIRTIDGGTHIEAMKASITRTLNGLGKKSNVIKDKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVEQSIHDYLTEYLELHPDVLDSILSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEECGMMVIGDVDMSSEVVQPESLFGEHLGAQQAYLMQAILPLRGKILNIERRDEAAMYKNEEIKNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVVRGKQVHYCYDEADLKKLKKSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEASVVFSSLMGTQVDIRKELIRNSASMIDLHQLDI 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03185 763 Gene3D - 514 762 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 SMART topII5 112 754 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 295 IPR036890 -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 631 648 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 651 663 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 613 629 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 693 709 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 383 396 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 112 127 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 147 160 - -
Vimu6g03185 763 PRINTS DNA topoisomerase II family signature 192 206 - -
Vimu6g03185 763 SUPERFAMILY Type II DNA topoisomerase 510 752 IPR013760 GO:0003918|GO:0005524
Vimu6g03185 763 CDD HATPase_GyrB-like 113 297 - -
Vimu6g03185 763 FunFam DNA gyrase subunit B 80 306 - -
Vimu6g03185 763 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 74 763 - -
Vimu6g03185 763 Pfam DNA gyrase B 308 505 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 Gene3D - 80 306 IPR036890 -
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 596 605 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 475 489 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 279 292 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 264 279 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 356 374 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 730 746 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 714 726 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 489 509 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 83 93 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 PRINTS DNA gyrase subunit B signature 427 443 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 SMART HKATPase_4 108 258 IPR003594 -
Vimu6g03185 763 Pfam DNA gyrase B subunit, carboxyl terminus 689 749 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Vimu6g03185 763 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 110 257 IPR003594 -
Vimu6g03185 763 CDD TopoII_Trans_DNA_gyrase 307 489 - -
Vimu6g03185 763 Gene3D - 307 513 IPR014721 -
Vimu6g03185 763 FunFam DNA gyrase subunit B 334 507 - -
Vimu6g03185 763 Pfam Toprim domain 565 646 IPR006171 -
Vimu6g03185 763 SUPERFAMILY Ribosomal protein S5 domain 2-like 350 506 IPR020568 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03185 K02470 - gmx:100807172 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03185 6 28321827 28340189 Vimu6g03185 6 28321827 28340189 ECH