Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03175 ATGGCGCTGCACTCCGTCTCTTCCGTTCCACACGTGCTGCGCCTCGCTGAGCCATTTCCTTCTCTCCATAACGCTCACCTCCTCCTTGACCCTGTCCCTTTCCGCCGCAAACCTAAGCGTCGAACTCGCAAATTGAGAGCGTTTCCCTCACCATCGCCACTCTCTCATTCTGCCGTCAAAGCTGTTCTCCATATCGATCGCACCGCCGCTGACAATAGCCTCCAGACATCGCCTGCTTCTTCTTCTTCTTCGCAACCGCAGTCACTTGTTGGACAGGTTGCAAACTTGGAGGACATACTATCAGAGAGAGGAGCCTGTGGGGTTGGATTCATTGCCAATTTGGAAAATAAGGGATCACATGAGATTGTCAAGGATGCTTTAAATGCTTTAAGTTGTATGGAACATCGTGGTGGTTGTGGAGCTGATAATGATTCTGGGGATGGTTCAGGGCTGATGACTGCAGTTCCTTGGGATCTACTTGACAATTGGGCCAACAAGCAAGGGATTGCTTCCTTTGATAAGTTGCATACTGGTGTTGGAATGGTTTTCTTACCAAAAGATGCACAACTTCTCAATGAGGCAAAGAAAGTTATTGTAAATATTTTTCGGCAAGAAGGTCTTGAGGTTCTTGGTTGGAGGCCTGTCCCTGTAAATACTTCTGTTGTAGGTTATTATGCAAAGGAGACCATGCCCAATATACAACAGGTATTTGTTAAGATTGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGTCGGAAATTGATTGAAAAAGCAGTAAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACCATAGTTTACAAAGGGATGCTTCGCTCAGAAGTTCTTGGGTTGTTTTATTCTGATCTTCAAAATGATCTTTACAAGTCCCCTTTTGCCATTTATCATCGAAGGTACAGCACAAATACCAGTCCCAGGTGGCCTCTTGCACAACCTATGAGGCTTCTTGGTCATAATGGAGAAATCAACACCATACAGGGGAACTTGAACTGGATGCAATCACGAGAACCATCATTGAAGTCACCTGTATGGCGAAACCGTGAAAATGAAATTCGTCCTTATGGAAATCCAAAGGGATCAGACTCAGCAAATCTTGACAGTGCTGCAGAATTATTGATAAGAAGTGGTCGAAGTCCCGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTATAAAAATCATCCAACTCTGACAATCAAATATCCTGAGGCGCTTGACTTCTATGACTATTACAAGGGTCAGATGGAAGCTTGGGATGGACCAGCCTTGCTTTTGTTCAGTGATGGGAAAACTATTGGTGCATGCCTTGATCGTAATGGACTTCGACCTGCAAGGTATTGGCGAACATCAGACAATATGGTCTATGTTGCCTCTGAGGTTGGTGTTGTGCCAGTGGATGATTCAAAGGTTGTCTTGAAAGGCCGATTAGGTCCAGGCATGATGATAACGGTTGATTTACCTGGTGGTCAGCTTAATTCATGCAATGCAACATGCAGTGCTCTCACCTGTTTTGTGACAAACCATGAGTTCCCTATGCTTAGCGATGTTTCTGACCAGGCCCAGTGCTTTTGGCCAAGGCTTAGGCATATTCAAATCTTACTCGTCTTACAGCAATCTTGGGAAAGGTTTGTGTTCTTCATCTGCCTTTATTCTGTTACTGTAGGTCGTCATCCTGTTATGCTGACACCATCTGTTCAATATGTCTATGAGAATACAGAGGTCAAAAAACGAGTAGCTTTATCAAATCCATACGGGAAGTGGATCAAGGAAAATTTGCGCTCTTTGAAGCCTGTGAATTTCCTTTCAGCCTCTCTGATGGACAATGAGGCAGTATTAAGAAACCAACAGGCATTTGGCTACTCTAGTGAAGATGTCCAGATGGTGATTGAAAGTATGGCTTCTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCACTGGCAGCATTGTCTCAGAAACCTCACATGCTTTTTGACTATTTCAAGCAACGGTTTGCGCAGGCTCTCTGCATATCCATATCTGTTTGTGTGTTTCTATGTAGAGCTGAGGTTACGAATCCTGCAATTGATCCTCTTCGAGAAGGATTGGTTATGTCTCTTGAAGTGAATATAGGGAAAAGAGGGAATTTATTAGAAGTTGGGCCAGAGAATGCTTCACAGGTTATGTTATCCAGTCCAGTATTGAACGAAGGGGAGCTTGAATCATTACTAAAAGACTCCCAGTTAAATCCACAAGTGTTACCTACATTTTTTGATATAACTAAGGGCATTGAAGGTTCTTTGGAGAAAGCATTAAACAAGCTTTGCGAGGCTGCAGATGAAGCTGTCAGAAACGGTTCACAGTTGCTTGTTCTATCAGACCGTTCAGATGCACTAGAACCAACTCATCCGGCAATTCCAATTCTTCTTGCTGTTGGTACTGTTCATCAGCATCTTATCTTGAATGGCCTGCGGACATCAGCTTCAATTATAGCAGATACTGCCCAGTGCTTTAGCACTCATCAGTTTGCATGCTTAATAGGATATGGTGCAAGGACAATGGAAAGGTTAGGTGGAAGTAACATTGCTGAAAGGGCATCTAGAACAGAAAATTGTTGTAGGAACAATAGTGCTGTGTCTCCATACTTGGCATTAGAGACATGTCGGCAATGGCGTTTGAGTAATAAAACTGTTAATCTGATGAGGAATGGAAAGATGCCCACTGTATCAATTGAGCAGGCACAAAAGAACTATTGCAAAGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAAATATTTGAAGTCTATGGATTAGGAAAGGAAGTTGTTGATCTTGCATTCAGAGGAAGTGTGTCAAAAATTGGTGGATTGACTTTTGATGAGGTGGCAAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGGTTGGAAAATTTTGGATTTATACAGTCCAGACCAGGAGGGGAGTATCATGCAAATAACCCAGAAATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAAAGCGCCTTTTCAGTTTATCAGCAATATTTGGCTAATCGACCTGTGAATGTTCTCCGTGATCTTCTTGAATTCAAGAGTGATCGTGCTGCAATTCCTGTGGGGAAGGTTGAACCTGCTTCGTCTATTGTGCAAAGGTTTTGCACTGGGGGAATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAAGCAATCGCAATTGCCATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGCGAGGATCCTGTTCGCTGGAAACCACTTACAGATGTTGTTGATGGTTACTCTCCCACACTTCCACATCTTAAGGGTCTTCAAAATGGGGACACTGCTACTAGTGCCATAAAACAGGTTGCTTCTGGAAGGTTTGGTGTCACTCCAACATTCTTGGCAAATGCTGATCAGTTAGAAATCAAGATTGCACAAGGCGCAAAACCCGGTGAAGGTGGACAATTACCTGGAAAAAAAGTTAGCATGTATATTGCAAGGTTGAGAAATTCTAAACCGGGAGTTCCGCTTATATCTCCACCTCCTCATCATGACATTTATTCTATTGAGGACCTTGCTCAATTGATCTTTGATCTTCATCAGGTGAATCCAAAGGCAAAGGTGTCTGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGAGTTGCAAAGGGCAATGCTGACATTATACAGATTTCAGGACATGATGGGGGAACTGGAGCAAGCCCTATAAGTTCCATCAAGCATGCAGGAGGTCCTTGGGAACTTGGTCTTACAGAATCTCACCAGACACTGATTGAAAATGGACTTAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGATTTAGAAGCGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGCTTTGGTTCTGTGGCAATGATCGCTACTGGATGTGTTATGGCTCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAATTGCGGGCACGCTTTCCTGGTGTACCTGGTGATCTTGTCAACTACTTTTTGTATGTAGCTGAGGAGGTAAGAGGCATATTGGCACAACTAGGGTATGAGAAATTGGATGATGTTATTGGCCGGACTGATTTGTTGCAACCAAGAGACATATCTCTAGCAAAGACTCAGCATCTAGATCTGAGTTATATCCTCTCTAGTGCTGGATTATCTAAATGGAGCAGTACAGAAATTAGGAACCAGGAGCCTCATACCAATGGTCCTGTTCTGGATGATAGTTTGCTAGCAGATCCAGAGATTGCAGATGCCATTAAAAATGAAAAGGTGGTTAACAAGACTGTAAACATATACAACATTGATCGTGCTGTTTGTGGGCGTATAGCTGGTGTCATTGCAAAGAAGTATGGTGACACCGGTTTTGCAGGACAGTTGAATATAACATTTACGGGAAGTGCTGGGCAGTCATTTGCTTGCTTTCTGACACCTGGAATGAACATTCGACTGGTAGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAGTTGGTTATCACTCCTGTTGACAAGACGGGGTTTGAACCTGAGGATGCAGCTATTGTGGGGAATACTTGCTTGTATGGGGCAACTGGTGGACAGGTCTTCGTCAGAGGGAGAGCTGGGGAGAGATTTGCTGTCAGAAACTCACTTGCTGAAGCTGTGGTTGAAGGCACAGGAGATCATTGTTGTGAGTACATGACAGGTGGCTGTGTGGTTGTCTTGGGAAAAGTGGGTAGAAATGTGGCTGCTGGAATGACAGGAGGATTGGCTTACATTCTAGATGAGGATGACACTCTCATTCCCAAGGTAAACAGAGAAATTGTAAAAATCCAACGGGTATCAGCCCCTGTTGGGCAGATGCAACTGAAGAGCCTGATTGAAGCTCATGTTGAAAAAACCGGTAGTACCAAAGGTGCGGCTATTCTGAAGGATTGGGATAAGTATTTATCACTGTTTTGGCAGCTGGTTCCACCTAGTGAAGAGGATACGCCTGAGGCAAATGCCAAGTATGACACAACTACCGCAGAGCAGGTCACTTTTCAGTCTGCTTAG 5223 0.4371 MALHSVSSVPHVLRLAEPFPSLHNAHLLLDPVPFRRKPKRRTRKLRAFPSPSPLSHSAVKAVLHIDRTAADNSLQTSPASSSSSQPQSLVGQVANLEDILSERGACGVGFIANLENKGSHEIVKDALNALSCMEHRGGCGADNDSGDGSGLMTAVPWDLLDNWANKQGIASFDKLHTGVGMVFLPKDAQLLNEAKKVIVNIFRQEGLEVLGWRPVPVNTSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSESWGNELYFCSLSNQTIVYKGMLRSEVLGLFYSDLQNDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRNRENEIRPYGNPKGSDSANLDSAAELLIRSGRSPEEAMMILVPEAYKNHPTLTIKYPEALDFYDYYKGQMEAWDGPALLLFSDGKTIGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDDSKVVLKGRLGPGMMITVDLPGGQLNSCNATCSALTCFVTNHEFPMLSDVSDQAQCFWPRLRHIQILLVLQQSWERFVFFICLYSVTVGRHPVMLTPSVQYVYENTEVKKRVALSNPYGKWIKENLRSLKPVNFLSASLMDNEAVLRNQQAFGYSSEDVQMVIESMASQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQALCISISVCVFLCRAEVTNPAIDPLREGLVMSLEVNIGKRGNLLEVGPENASQVMLSSPVLNEGELESLLKDSQLNPQVLPTFFDITKGIEGSLEKALNKLCEAADEAVRNGSQLLVLSDRSDALEPTHPAIPILLAVGTVHQHLILNGLRTSASIIADTAQCFSTHQFACLIGYGARTMERLGGSNIAERASRTENCCRNNSAVSPYLALETCRQWRLSNKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDEVARETLSFWVKAFSEDTAKRLENFGFIQSRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQYLANRPVNVLRDLLEFKSDRAAIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPVRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYEKLDDVIGRTDLLQPRDISLAKTQHLDLSYILSSAGLSKWSSTEIRNQEPHTNGPVLDDSLLADPEIADAIKNEKVVNKTVNIYNIDRAVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGIAGGELVITPVDKTGFEPEDAAIVGNTCLYGATGGQVFVRGRAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNREIVKIQRVSAPVGQMQLKSLIEAHVEKTGSTKGAAILKDWDKYLSLFWQLVPPSEEDTPEANAKYDTTTAEQVTFQSA 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03175 1740 Pfam GXGXG motif 1490 1672 IPR002489 GO:0016491
Vimu6g03175 1740 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1458 1721 IPR036485 GO:0016491
Vimu6g03175 1740 CDD GltS_FMN 1027 1422 IPR002932 GO:0006537|GO:0015930|GO:0016638
Vimu6g03175 1740 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1009 1424 - -
Vimu6g03175 1740 SUPERFAMILY FMN-linked oxidoreductases 626 1443 - -
Vimu6g03175 1740 CDD GltS 106 509 - -
Vimu6g03175 1740 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 106 520 IPR029055 -
Vimu6g03175 1740 Pfam Conserved region in glutamate synthase 1024 1408 IPR002932 GO:0006537|GO:0015930|GO:0016638
Vimu6g03175 1740 Pfam Glutamine amidotransferases class-II 106 509 IPR017932 -
Vimu6g03175 1740 Gene3D Aldolase class I 1011 1462 IPR013785 -
Vimu6g03175 1740 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 106 509 IPR029055 -
Vimu6g03175 1740 FunFam Glutamate synthase, large subunit 106 520 - -
Vimu6g03175 1740 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 106 505 IPR017932 -
Vimu6g03175 1740 Pfam Glutamate synthase central domain 890 965 IPR006982 GO:0006807|GO:0015930
Vimu6g03175 1740 Pfam Glutamate synthase central domain 632 867 IPR006982 GO:0006807|GO:0015930
Vimu6g03175 1740 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1446 1721 - -
Vimu6g03175 1740 Gene3D - 1463 1738 IPR036485 GO:0016491
Vimu6g03175 1740 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 108 1722 - -
Vimu6g03175 1740 CDD gltB_C 1465 1715 IPR002489 GO:0016491
Vimu6g03175 1740 Gene3D Aldolase class I 888 1010 IPR013785 -
Vimu6g03175 1740 Gene3D Aldolase class I 698 887 IPR013785 -
Vimu6g03175 1740 Gene3D Aldolase class I 616 693 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03175 Vimu-Chr6 28167739 28198339 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03175 K00284 - gmx:548016 2119.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03175 6 28167739 28198339 Vimu6g03175 6 28167739 28198339 ECH