Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03162 ATGGGAAGCCTATTCGAGTCCATCGGAAATTTCTTCACCGGCGGCGAACAGATCCCGTGGTGCGACCGTGACGTCATTGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTCGTGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATGTTCAGCGCGGGATAGCCATGCTTGAAACTTCTTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGTTATATCTTCTGGCTGTTGGTTACTATAGAAGTAATGACTATGGAAGGAGCAGGCAACTCGTGGAACAATGTTTGCAGATTGCACCTGATTGGAGGCAAGCACTGGCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTCTGGGACTTATAGTTGGTGGCATTGCTACCGCATTGGCCCGGAGGAATTGA 492 0.4736 MGSLFESIGNFFTGGEQIPWCDRDVIAGCEREVAEAARGDSEERKNESIMRLSWALVHSRQKEDVQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLQIAPDWRQALALKKIVEDRIAKDGVIGIGITATALGLIVGGIATALARRN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03162 163 PIRSF TPR_repeat_11_Fis1 1 163 IPR016543 GO:0000266
Vimu6g03162 163 Gene3D Tetratricopeptide repeat domain 20 162 IPR011990 GO:0005515
Vimu6g03162 163 Pfam Fis1 C-terminal tetratricopeptide repeat 86 138 IPR028061 -
Vimu6g03162 163 SUPERFAMILY TPR-like 6 162 IPR011990 GO:0005515
Vimu6g03162 163 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 2 159 IPR016543 GO:0000266
Vimu6g03162 163 Pfam Fis1 N-terminal tetratricopeptide repeat 47 76 IPR028058 -
Vimu6g03162 163 FunFam Mitochondrial fission 1 protein 20 163 - -
Vimu6g03162 163 CDD Fis1 19 137 IPR033745 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03162 Vimu-Chr6 28024918 28029834 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03162 K17969 - gmx:100785425 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03162 6 28024918 28029834 Vimu6g03162 6 28024918 28029834 ECH