Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03160 ATGGCAGCTGAGAACGGGTTCGAATTGGCGAGAGTGGGAGGAGAAGGAGAAGAACAAGAAGAAGCAGAACAAGTGAAAGGGTGTTTGAGTAAGTTCATCGATGATGGCAGCGTTGAAAGTCACAGATACTACTTGTCTCGCAGAACTACTTTGGAAATGCTCAGAGACAGAGGCTACTCTATTCCCTCCAGCGAAATCGACCTTTCTCTCTCCCAATTCCGCCACATGCATGGTCATTCCCCCGACCCTGACCGTCTCCGCCTCTCCCTCACTCACGCCACCAACCCTTCCAAAAGGATTTTAGTAATTTTCTGCGGACCGGGTTCTGTGAAAGTTACTGCCATTCGGAACATTGCGGGGCAGATTGTTAATAGAGACACTTTGGGTGGTCTTATATTGATAGTGGAGAGTCATGTTACTAGCCAGGCCTTGAAAGCCGTTGATCTTTTTTCCTTCAAGGTTGAAATTTTCCAGGTGGATAATATAAAACTGCATGTTGTATTTCTAGCAGGATTGGTTGACACGGTTTTCATTATTGACCTCTGTGCACTTAAAAGTTACCATGTTGAACAAACCTATATCACAGATTTGCTTGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCATCAGGTGCTGACTGATAGGCAGAAGAAAAATCTCCTGAAGAAGTTCAATATAGAAGAAAAGCAGCTTCCCCGCATGCTAAAGACTGATGCAATTGCACGATATTATGGACTTGAGAGGGGCCAAGTAGTTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACATATCGATGTGTGTGGTGA 819 0.4408 MAAENGFELARVGGEGEEQEEAEQVKGCLSKFIDDGSVESHRYYLSRRTTLEMLRDRGYSIPSSEIDLSLSQFRHMHGHSPDPDRLRLSLTHATNPSKRILVIFCGPGSVKVTAIRNIAGQIVNRDTLGGLILIVESHVTSQALKAVDLFSFKVEIFQVDNIKLHVVFLAGLVDTVFIIDLCALKSYHVEQTYITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLKTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03160 272 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 37 161 IPR014381 GO:0003899
Vimu6g03160 272 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 37 162 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vimu6g03160 272 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g03160 272 SUPERFAMILY RPB5-like RNA polymerase subunit 197 272 IPR035913 -
Vimu6g03160 272 Pfam RNA polymerase Rpb5, C-terminal domain 199 271 IPR000783 GO:0003677|GO:0003899|GO:0006351
Vimu6g03160 272 Pfam RNA polymerase Rpb5, N-terminal domain 39 121 IPR005571 GO:0003677|GO:0003899|GO:0006351
Vimu6g03160 272 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 197 272 - -
Vimu6g03160 272 Gene3D - 34 163 IPR036710 GO:0003677|GO:0003899|GO:0006351
Vimu6g03160 272 Gene3D - 194 272 IPR035913 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03160 Vimu-Chr6 28013905 28018315 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03160 K03013 - gmx:100306033 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03160 6 28013905 28018315 Vimu6g03160 6 28013905 28018315 ECH