Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03154 ATGGCCATGACAAATTCATCTTCATCTACTCACGATAATACTCCTTCATACCTTTACCTACACCCCAATGAAAACCCTGCCATAGCCCTGGTCTCTCCTATTCTAAATGCCACAAATTATCATTCTTGGAGCAGATCTTTCATCACAGCCCTTTCTGCCAAAGACAAAGTCGAATTTGTTCTTGGATCCGCTCCTCAACCTTCCAAAACTAATGCCTCCTTCCCTGCTTGGTTCCGCTGCAACAGTATGGTTGTTTCTTGGCTTATACATTCTGTTTCTCCTTCAATTCGCGAAAGCATTATCTGGATGGATCTTGCTATCGACATTTGGACTGATCTGAAACACCGTTTTGCCCAAGGCGATCTTGCAAGAATCTCCGCCCTTCAAATGGAAGCCACTACTCTACCACAAGCTCGACTGTTTCCGTCCGGACCCTGTTTGTACCTGCCAGACAAAATGTTCATGCACCGTCTCGGCCGTTCTTTCTCAACGTTTGATTTTGATCACTATACCAACATACAATCTCATATACTCCTTCTTGATCCTATTCCCCCTTTTTCCAAAATTTTTTCCCTTGTTCTTCAACAAGAACGTCAACTGATGAATGACCATATCACTGCCTCTGTCACCACTACCCCTTTTCCTAGTTCCACATCTACCTCTGTCACTTGCAATTACTGCAATAAAGTTGGCCACCAAGAAAATACATGTTTCAAAAAACATGGTTTCCCTAACCAAGAACACAAGAATGTCAAAACTACCAACATTAATTCTCGCAAGATCTGCACTTACTGCCACAGAAACGGCCATACCATAGACATTTGTTTCAAGAAACACGGTTATCCGCCCGGCCACAAATTTTCCACCAAAGCCAGTCAAGTTCACAATGTTCTCTCGACCACTAATGCCGATAACCAATTGAAAAGCTTGGATACCGAACGTTCTTCTCCTGAGACAATTCAACTTACTCCTCAACAATATCAAATCCTTGCCGAGTTGTTCAAACAATCAACGACCAACAATTCCAATGTACACATCAACCAAGTTGGCACGGTTTCTACCAATCTGTCTCCAGGTAATATTGTTTCAATTTCTCAGATGCATTCTAGCAATATTTGGCTTCTTGACTCTGGTGCTACTGACCACGTTTGTATCTCTTTAACATTTTTTACTTCTTATCAAAAGATTAACCCAATTCCTATATGTTTACCTAACGGTAAAATAATACATGCTAATTACAAGGGTACAGTTAAAGTCAATACCAAACTTTCTCTTTCTAATGTGCTATATGTTCCTGATTTTTCATTCAACCTTGTTTCTGTTTCTCAACTTATAGCTCAACACAAATGTCAACTCATTTTCTCTCCTTCTGGCTGCATTATGCAAGACATACATAGCCAAGAGAAGATTGGTTTGATTAGACACCACAATGGCTTATATCTACTTGATCCATCTATCTGTAAAATTGACATTAACTGTACCCCTGTTGTCTGTTCTGTTAAGCACACATATTTATGGCATGCTCGTCTTGGACATTTATCACATGATAGGCTACAACTGTTACAACACAAACACAGTTACATAAACACTGCTGACAACAACAATTTTTGTGATGCCTGCCATCGGGCCAAACAAAAGAAATTGCCTTACACTGCTAGCACTTCTACTTCTTTATCCTCTTTTGAATTATTGCATATTGATATATGGGGTCCTACTACTGCTTCCATGAATGGCTACAAATACTTGCTAACCATTGTTGATGATTACTCTCGTTATACTTGGATCATTCCTATGATAGATAAATCTTCTGTCAAAAATCAGATTCTCACCTTCCTATGCTATGTAGAAAATCAATTTCATAAAAAGGTTAAAACTATCCGCACAGATAATGGTGTTGAATTTATTCTACAAAATATGTTTTCAAGTAAAGGAATTATCCATCAAACTACTTGTGTGGAAACCCCTGAACAAAATGGAGTGGTTGAACGTAAACATCAACACATTTTAAATACCGCTCGTGCTTTGCTTTTTCACTCACATCTACCTCTTGCATTCTGGTGTTATGCAGCTAAACATGCTGTATTCTTGATAAATCAAATGCCTACACCGGTTCTACAGAATGAAACCCCTCATGAACGGCTACATGGATCTCCCTGTGATCTCTCTCTGTTACGTGTCTTTGGCTGTCTCTGCTATGCCAACACCATAACTTCTCAAAGAAAAAAGTTTGATGATCGTGCTATTCCTGGTATCTTCTTAGGCTTTAAAAAGCACACGAAAGGTTATCTATTTCTCAACCTAAAAAACCACAAGATTGAAATATCTCGTAATGTTGTTTTTCATGAAAACACTTTTCCATATCATAATACTCCCAAAACCGACAACTCTTTATCTCTACCTATACCACATCACTACACTAACAATTATGATGAACTTTTACCGTCCGGTCATGCTGCTCAATTGCCGTCCGTTTTTCCACATACTGATACTCGTAATAATGGTACTATTCACAACACATCCACAGATGTTGTTCAAACGAATGACACTGCTAGTAACACTTCCACTAGCACAAGAAAGTCTTCTAGAACGCGTAGGATTCCTGCTTACTTAAAAGATTTTCAGACGAACGGTGTTATAAGATATCCCATTACGAATTACATTAATTATAACAGGCTTTCCCATACTTTCAAGCATACTATATTATCTATCTCATCTAATGCTGAACCAACATGCTATTCTATTGCCTCAAAACAACCTCAATGGGTCACTGCCATGCATGCCGAGCTCGATGCCCTGCAAGCTAATAACACTTGGGAACTCACCACCCTACCTCCCAACAAAACTGCCATTGGCTGTCGGTGGATTTACAAAGTCAAATATAATTCAGATGGCTCTATTGAACGATATAAAGCACGCCTCGTTGCCAAAGGATACAATCAGATTGAAGGACTTGATTATCTCGATACTTTTGCCCCTGTTGCCAAAATCACTACGGTTCGGCTTCTTCTTGCCGTAGCCGCTTCCAAGTGTTGGTCACTTAAACAATTGGATGTTAATAATGCCTTCTTACATGGTGATCTTCATGAAGAGGTTTATATGGAAATTCCTCCTGGCCTCACCCCCGCCAACAAAAATCAGGTTTGTAAACTCCAACGCTCTTTATATGGCCTTAAACAGGCCGACCGCCAATGGTATGCTAAATTACATCAGTTTTTACTATCAAATAATTATCACTGTTTTATCTCTGACAATTCTCTTTTTCTGAAACATGATGGCAATCACACTACGGCGTTACTTATCTATGTTGATGATATCCTCATCACTGGCAACGATGATGGAGAAATTCAACACATAACTGACCTCCTTCATCCTACCTTCCGTATTAAGAACCTTGGTAATCTCACATACTTTCTCGGTCTGGAAGTTGCTCGCAACTCCAAAGGAATACATCTTAGCCAACGCAAGTATACCTTGGATCTCCTTGCTGAAACCGGCCTTCTCGACAGTTCGCCCGTCCCCACTCCCATGGTTCCTAAACAATCTACTACTAATACCGTCCGGTCTCTTGATGACACTGATGCTGCCTCTTATCGACGTCTCATTGGTAAACCTATATATATAACCACGACTCGTCCTGACATTACCTTTGCTGTCAACCATCTCAGTCAGTTCATGTCTGCTCCTACGACTGCTCACCAACAAGCTACCGGTCGCATCCTCCGTTATCTCAAAGGCACTCCTGGTACTGGTATTTTTCTTCCCAGCACATCTTCCATTCAACTGAAAGCCTTTTGTGACTCCGACTGGGCCGCTTGTCCTGATACTCGCCGTTCGGTTACTGGATTCACCGTCTACCTTGGCAATTCTCTCATCTCTTGGCGCTCCAAGAAACAACCGACCGTCTCCCGTAGTTCTTCTGAGGCCGAGTATCGTTCACTTGCCAGCACGGTGTGTGAAATACAGTGGCTCACATACTTGCTTAATGACCTCCACGTTGCTCATACGTCACCTGCTCTCATCTATTGTGATAACCAATCTGCCATACAAATTGCTTCCAATCAAGTCTTTCATGAACGTACAAAGCACATTGACATTGACTGTCACATTGTTCGTGAAAAAGTTGTCTCTGCCGACATATTAACCAAACCGTTACCTCCTCCTACCTTTCAACATCTTCGTTCCAAGCTGGGACTCCAAAATATTTACGCCCAGCTTGAGGGGGCTACCGTCAGGTACATTAGTACTCTTGTTACTATTTGGTATAAATACCGTCCGGTACCTTGGTACTCCTGTTACCACTCCGTATCTTTGTTGCTACCGGCCGGTACATTAGTACTTCTGTTACCACCCATCCGGTACACTAGTACTTTTGTTACCACTCAGTATGCTCATCGCTTGTTAAAGGCCAGTGGCACACAAACCGAAACTCAACTCCCTCATCCTTTTCTCTTCTCTCTCCAATCCACGATGAGGCTTCAACCGCACTTCGCGGTGGCCGTGGCGGCGTTTGTGGCGACCGCTTGGGTGGTGCACATGAGCAGCGACGTTCGCAAGTCAGGGGAAGACGTTGAAGGCATGCAGGACTGGCAGTACGAAGCTGTTTCGATTGACGGCGGCGTTGGACCGGAGAGTTTCGCCTTCGATCCTCGCGGCGAAGGGCCTTACACCGGCATTTCCGACGGTCGAATCATCAAATGGCAGCGCTCGGAGAATCGTTGGCTCAACTTTTCCGTTACTTCCTTGCAGAGGAATGAAGAGTGTGGAGGAGCATACGAGGAGCATGCGAAGAAAGAGCACGTGTGTGGGCGTCCACTTGGGTTGTGCTTTAGCATGGTATCCAATGAACTTTATATTGCAGATGCTTACAATGGCTTAGTTGTTGTTGGCCCCAATGGTGGCACTCCATCAAGATTCATATCAACTTTACAAGTAGAAGAAGAAGAAGAAGAAGAAGGTGAACCCTTGGCTTTCACAAATGGTTTGGATGTTGATCAACGAACTGGAGCAGTCTACTTCACCACCAGTAGTTCTAAATATCAAAGGAGGAATTACATCTCTTTGATCTTGAGCAGAGATAAATCCGGGAAGCTAATGAAATACGAGCCAGAAAGTGAACAACTTACCATTGTTCTGAAAAATCTCTCGTTTGCAAATGGTGTAGCATTAAGCAAAGACGGTGACTACATTCTAATAATAGAGACAACAACATGCAGAGTATTAAGGTATTGGCTAGAAACACCAAAAGCTGGAACATTGGAAGTGTTTGCTGAAGTACCAGGTTTCCCAGACAACATAAAACGAAGTCCAAGAGGGGGGTTTTGGGTCGGAATTTACTCAAGAAGAGAAAGATTTATCCAATGGATTCTATCATATCCATGGATTGGAAAAGTTTTGCTTTCACTTCCTTTGGACATTACAAAAGCTTATTCATATTTGGCTAAGTTAAAAAGAAGTAGTGGAATGGCAATTAGACTAAGTGAGGATGGAGATATATTACAAGTTGTTGAAGACAAAAAATGGAACAAAGGAAGGTCTATTAGTGAAGTGGAGGAAAGAGATGGAATATTATGGGTTGGTTCCATTGATGCACCTTTTGTTTCTAAGTATAATATTCATGTGCCAAAACAACAAGTAAAAGGAATTTGA 5646 0.4169 MAMTNSSSSTHDNTPSYLYLHPNENPAIALVSPILNATNYHSWSRSFITALSAKDKVEFVLGSAPQPSKTNASFPAWFRCNSMVVSWLIHSVSPSIRESIIWMDLAIDIWTDLKHRFAQGDLARISALQMEATTLPQARLFPSGPCLYLPDKMFMHRLGRSFSTFDFDHYTNIQSHILLLDPIPPFSKIFSLVLQQERQLMNDHITASVTTTPFPSSTSTSVTCNYCNKVGHQENTCFKKHGFPNQEHKNVKTTNINSRKICTYCHRNGHTIDICFKKHGYPPGHKFSTKASQVHNVLSTTNADNQLKSLDTERSSPETIQLTPQQYQILAELFKQSTTNNSNVHINQVGTVSTNLSPGNIVSISQMHSSNIWLLDSGATDHVCISLTFFTSYQKINPIPICLPNGKIIHANYKGTVKVNTKLSLSNVLYVPDFSFNLVSVSQLIAQHKCQLIFSPSGCIMQDIHSQEKIGLIRHHNGLYLLDPSICKIDINCTPVVCSVKHTYLWHARLGHLSHDRLQLLQHKHSYINTADNNNFCDACHRAKQKKLPYTASTSTSLSSFELLHIDIWGPTTASMNGYKYLLTIVDDYSRYTWIIPMIDKSSVKNQILTFLCYVENQFHKKVKTIRTDNGVEFILQNMFSSKGIIHQTTCVETPEQNGVVERKHQHILNTARALLFHSHLPLAFWCYAAKHAVFLINQMPTPVLQNETPHERLHGSPCDLSLLRVFGCLCYANTITSQRKKFDDRAIPGIFLGFKKHTKGYLFLNLKNHKIEISRNVVFHENTFPYHNTPKTDNSLSLPIPHHYTNNYDELLPSGHAAQLPSVFPHTDTRNNGTIHNTSTDVVQTNDTASNTSTSTRKSSRTRRIPAYLKDFQTNGVIRYPITNYINYNRLSHTFKHTILSISSNAEPTCYSIASKQPQWVTAMHAELDALQANNTWELTTLPPNKTAIGCRWIYKVKYNSDGSIERYKARLVAKGYNQIEGLDYLDTFAPVAKITTVRLLLAVAASKCWSLKQLDVNNAFLHGDLHEEVYMEIPPGLTPANKNQVCKLQRSLYGLKQADRQWYAKLHQFLLSNNYHCFISDNSLFLKHDGNHTTALLIYVDDILITGNDDGEIQHITDLLHPTFRIKNLGNLTYFLGLEVARNSKGIHLSQRKYTLDLLAETGLLDSSPVPTPMVPKQSTTNTVRSLDDTDAASYRRLIGKPIYITTTRPDITFAVNHLSQFMSAPTTAHQQATGRILRYLKGTPGTGIFLPSTSSIQLKAFCDSDWAACPDTRRSVTGFTVYLGNSLISWRSKKQPTVSRSSSEAEYRSLASTVCEIQWLTYLLNDLHVAHTSPALIYCDNQSAIQIASNQVFHERTKHIDIDCHIVREKVVSADILTKPLPPPTFQHLRSKLGLQNIYAQLEGATVRYISTLVTIWYKYRPVPWYSCYHSVSLLLPAGTLVLLLPPIRYTSTFVTTQYAHRLLKASGTQTETQLPHPFLFSLQSTMRLQPHFAVAVAAFVATAWVVHMSSDVRKSGEDVEGMQDWQYEAVSIDGGVGPESFAFDPRGEGPYTGISDGRIIKWQRSENRWLNFSVTSLQRNEECGGAYEEHAKKEHVCGRPLGLCFSMVSNELYIADAYNGLVVVGPNGGTPSRFISTLQVEEEEEEEGEPLAFTNGLDVDQRTGAVYFTTSSSKYQRRNYISLILSRDKSGKLMKYEPESEQLTIVLKNLSFANGVALSKDGDYILIIETTTCRVLRYWLETPKAGTLEVFAEVPGFPDNIKRSPRGGFWVGIYSRRERFIQWILSYPWIGKVLLSLPLDITKAYSYLAKLKRSSGMAIRLSEDGDILQVVEDKKWNKGRSISEVEERDGILWVGSIDAPFVSKYNIHVPKQQVKGI 1881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03154 1881 CDD RNase_HI_RT_Ty1 1262 1387 - -
Vimu6g03154 1881 Pfam GAG-pre-integrase domain 478 545 IPR025724 -
Vimu6g03154 1881 ProSiteProfiles Integrase catalytic domain profile. 545 718 IPR001584 GO:0015074
Vimu6g03154 1881 Pfam Strictosidine synthase-like, N-terminal 1532 1566 - -
Vimu6g03154 1881 SUPERFAMILY DNA/RNA polymerases 936 1368 IPR043502 -
Vimu6g03154 1881 Pfam gag-polypeptide of LTR copia-type 21 67 IPR029472 -
Vimu6g03154 1881 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 935 1176 IPR013103 -
Vimu6g03154 1881 PANTHER GAG-POL-RELATED RETROTRANSPOSON 502 1406 - -
Vimu6g03154 1881 Pfam Strictosidine synthase 1659 1746 IPR018119 GO:0009058|GO:0016844
Vimu6g03154 1881 SUPERFAMILY Calcium-dependent phosphotriesterase 1528 1877 - -
Vimu6g03154 1881 FunFam Protein STRICTOSIDINE SYNTHASE-LIKE 13 1528 1872 - -
Vimu6g03154 1881 Gene3D - 553 728 IPR036397 GO:0003676
Vimu6g03154 1881 Pfam Integrase core domain 562 655 IPR001584 GO:0015074
Vimu6g03154 1881 SUPERFAMILY Ribonuclease H-like 560 714 IPR012337 -
Vimu6g03154 1881 Gene3D - 1530 1878 IPR011042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03154 Vimu-Chr6 27904512 27913901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03154 856 1419 Receptor kinase-like Gene Family AT4G23160 45.899 5.72e-164 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03154 - - vra:106752909 1501.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03154 6 27904512 27913901 Vimu6g03154 6 27904512 27913901 ECH