Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03152 ATGGCTACAATAGCTGTCAGGATTCTCGGTTCCAATTCGCGAACCGCCCTCCGTCGCTGGTGTCGGTCCTCTTACTCCTCTACCTCCGCCGCGGTGGCGGAAGCGGAGAGCACGGAGGTTAAGGACTACGCCGATTACCGGCGCTCCCTATACGGACAGATCACGCACAAGGCGCTCCTCGTCGACGCCGTTGGCACGCTCGTCCTCCCCTCGCAACCAATGGCTCAGATTTATAGGACGATTGGCGAAAAGTATGGTGTGGAATACTCGGAGGATGAAATACTGTTTAGATACAGAAGAGCATATGGGCAGCCTTGGGGAAAATCTCGTCTCAGATATGTTAATGATGGTAAGCCCTTCTGGCAATACATAGTTAGTTATTCCACCGGCTGTTCAGATCCTCAATACTTTGAAGAACTTTATAACTATTATATGACAGAGAAGGCATGGCACCTCAATGATCCCGGAGCAGAAGAAGTATTTAGAGCTCTTCGAAAATCAGGTGTGAAATTAGCTGTTGTATCAAATTTTGACACTAGGTTAAGACCTCTCCTGCGGGCATTAAATTGTGACACTTGGTTTGATGCGGTAGCAGTGTCAGCTGAGGTTGCGGCCGAAAAACCAAATCCAACTATATTTCTTAAAGCATGTGAACTATTGGATGTAAAGCCTGAGGATGCTGTTCATGTTGGGGATGATCGCAGAAATGATATATGGGGTGCCAGGGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGCGATGTTCACTCTTTTAAGGAGGTATTTAAAATCTTCATCTCTTTCTAG 807 0.4746 MATIAVRILGSNSRTALRRWCRSSYSSTSAAVAEAESTEVKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAQIYRTIGEKYGVEYSEDEILFRYRRAYGQPWGKSRLRYVNDGKPFWQYIVSYSTGCSDPQYFEELYNYYMTEKAWHLNDPGAEEVFRALRKSGVKLAVVSNFDTRLRPLLRALNCDTWFDAVAVSAEVAAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVFKIFISF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03152 268 PANTHER - 17 263 - -
Vimu6g03152 268 Gene3D - 60 252 IPR023214 -
Vimu6g03152 268 Gene3D - 72 145 IPR044924 -
Vimu6g03152 268 CDD HAD_dREG-2_like 157 264 - -
Vimu6g03152 268 SUPERFAMILY HAD-like 57 259 IPR036412 -
Vimu6g03152 268 SFLD Haloacid Dehalogenase 57 250 - -
Vimu6g03152 268 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 57 250 - -
Vimu6g03152 268 NCBIfam HAD-IA family hydrolase 143 247 IPR006439 -
Vimu6g03152 268 Pfam Haloacid dehalogenase-like hydrolase 65 248 IPR041492 -
Vimu6g03152 268 NCBIfam HAD-IA family hydrolase 165 245 IPR006439 -
Vimu6g03152 268 NCBIfam HAD hydrolase, REG-2-like, family IA 57 250 IPR011949 -
Vimu6g03152 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 212 232 IPR006439 -
Vimu6g03152 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 56 67 IPR006439 -
Vimu6g03152 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 194 210 IPR006439 -
Vimu6g03152 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 164 177 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03152 Vimu-Chr6 27877765 27880704 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03152 - - pvu:PHAVU_001G126300g 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03152 6 27877765 27880704 Vimu6g03152 6 27877765 27880704 ECH