Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03147 ATGATTTATAGGAAACTTCGTGGAAGCTACCCAAGAGTGAGAAATGGCCCTCTCATGGCGCCTCCATTTAATCCCACCACCTTCCCCACTCTTTCCTCTCAACCCCCACCTTTTACTTTTCTCTTCCTCTTCTTCTTCTTCTTCTTCCACATTCTTCATTCTCTTCAATCACCCATAATGAAGCTCATTAGCATCAACCCCAAAAACCTCAAACTCAGTCCAAAACACCTCTTCCGCTCCAAAAAGGACCGATCTTTATCCCGATCCGACCCACCCTCTTTCGGATCCTCCTCCTCCGATGACTCCGTCCACAAGCCCGCCGCACCCAGTGCCGCCGGTTCTCTCACTCCCACTAGCGTCCTCCCTGGCGCTTCCGGCGACTGGTCCGACGTCACTGTCGACGTTCGGTGGGACCTCGCCCAGGCCTTCCGCCTAATCGACCGAGACAACGATGGGGTCGTTTCTCGCCAGGATCTTGAGGCAATCCTCACGCGCCTGGGCGCGTCCGACGTCGCGCTCATGCTCAGTGAGGTCGACGGAGGAGCCGGAGGCTGCATCACAGTGGAGGCCCTCATGAACCACATCGGGTCGGGTCCAGAGTCCGGGTCGGATCCGGAGGAACTTAAGGAGGCCTTCGCAGTGTTCGACACGGATCGTGATGGTAGGATCTCGGCGGAGGAGTTGCTTCGGGTGTTCAGAGCTATCGGCGACGAGCTGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGTGTGGACAAGAAAGGGGACGGATTCGTGTGCTTTGAGGACTTCTCTCGTATGATGGAACTGCATCGGTGA 822 0.5645 MIYRKLRGSYPRVRNGPLMAPPFNPTTFPTLSSQPPPFTFLFLFFFFFFHILHSLQSPIMKLISINPKNLKLSPKHLFRSKKDRSLSRSDPPSFGSSSSDDSVHKPAAPSAAGSLTPTSVLPGASGDWSDVTVDVRWDLAQAFRLIDRDNDGVVSRQDLEAILTRLGASDVALMLSEVDGGAGGCITVEALMNHIGSGPESGSDPEELKEAFAVFDTDRDGRISAEELLRVFRAIGDELCTLEECRRMIEGVDKKGDGFVCFEDFSRMMELHR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03147 273 Gene3D - 204 272 - -
Vimu6g03147 273 ProSiteProfiles EF-hand calcium-binding domain profile. 203 238 IPR002048 GO:0005509
Vimu6g03147 273 SMART efh_1 138 166 IPR002048 GO:0005509
Vimu6g03147 273 SMART efh_1 207 235 IPR002048 GO:0005509
Vimu6g03147 273 SMART efh_1 244 272 IPR002048 GO:0005509
Vimu6g03147 273 ProSitePatterns EF-hand calcium-binding domain. 216 228 IPR018247 -
Vimu6g03147 273 FunFam Probable calcium-binding protein CML35 191 273 - -
Vimu6g03147 273 Pfam EF-hand domain 139 167 IPR002048 GO:0005509
Vimu6g03147 273 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Vimu6g03147 273 MobiDBLite consensus disorder prediction 81 119 - -
Vimu6g03147 273 CDD EFh 207 269 IPR002048 GO:0005509
Vimu6g03147 273 Gene3D - 133 193 - -
Vimu6g03147 273 MobiDBLite consensus disorder prediction 89 104 - -
Vimu6g03147 273 SUPERFAMILY EF-hand 130 271 IPR011992 -
Vimu6g03147 273 ProSiteProfiles EF-hand calcium-binding domain profile. 138 169 IPR002048 GO:0005509
Vimu6g03147 273 CDD EFh 138 233 IPR002048 GO:0005509
Vimu6g03147 273 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 207 270 - -
Vimu6g03147 273 Pfam EF-hand domain pair 206 269 IPR002048 GO:0005509
Vimu6g03147 273 ProSiteProfiles EF-hand calcium-binding domain profile. 240 273 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03147 Vimu-Chr6 27789417 27791920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03147 71 269 EF-hand Containing Proteins AT2G41410 53.883 2.69e-56 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03147 K13448 - gmx:100815559 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03147 6 27789417 27791920 Vimu6g03147 6 27789417 27791920 ECH