Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03142 ATGGCTCAATTGCTATCATCCTCTTACTCCTTGACTATCTGCTCTAGAAATAAACCTTACTTAAAACCTTTTAAGCAATGCTCGACACCATTTTCAATAGCGGTTTCTTGCAATAATTCTAAACCTTCATCTAGAGGGTTTTTCTTGCAAGAACAGAAGCTAAGAAAACATTCTCTATCAGTACATGCTGCTGCAGTTTCAACTAGCCAGGAAACCCCAGTTCAAACTAGCTCTGGTAATCCTTTTAAACCACAGAGAGTCATGGTCATTGGTGGAGATGGATACTGTGGTTGGGCAACTGCTCTCCATCTTTCTAACAAGGGTTATGAGGTTGCCATTGTTGACAGTCTTGTGCGACGCCTTTTTGATCACCAGCTTGGACTGGAGTCTCTAACACCAATTTCCTCCATCCAGAATCGTCTTCATTGTTGGAAATCTCTCACTGGAAAAAATATTGAGCTCTACATTGGAGACATATGTGATTTTGAGTTCTTATCTGAAACCTTCAAGACATTTGAACCTGATGCTGTTGTCCACTTTGGGGAACAACGGTCTGCTCCTTACTCTATGATAGATCGGTCAAGAGCTGTGTATACCCAGCAAAACAACGTTGTTGGGACACTGAATGTGCTCTTTGCCATAAAAGAGTTCAGAGAGCAGTGTCATCTAGTTAAGCTTGGGACCATGGGCGAATATGGGACACCAAATATTGATATTGAGGAAGGTTACATTACCATTACTCACAATGGAAGAACAGACACGTTGCCATATCCCAAACAAGCTAGCTCATTCTATCACCTAAGCAAGGTACATGATTCACATAACATAGCTTTCACTTGCAAAGCTTGGGGCATTCGAGCAACTGACTTGAATCAAGGAGTGGTGTATGGGGTAAGGACAGATGAGACTGCACTGCATGAAGAGCTGTATAACAGGTTTGATTACGATGGAATATTTGGAACTGCATTGAACCGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCTCTGACTGTGTATGGTAAAGGAGGCCAGACTAGGGGCTTCCTTGACATAAGAGATACAGTTCAATGTGTTGAGCTTGCGATTGCAAACCCTGCGAAGCCAGGGGAGTTCCGAGTCTTCAACCAATTCACTGAGCAGTTTTCAGTGAATCAGCTTGCCGAGCTTGTTACCAAAGCTGGTGAGAAGCTGGGCCTTGATGTGAAAACTATCCATGTGCCTAATCCAAGAGTTGAGGCAGAAGAGCATTACTACAATTGCAAGAACACTAAACTTGTTGATCTGGGACTCAAACCACACTTTCTTTCAGATTCTCTCCTTGATTCACTGCTGAACTTCGCTGTTCAGTACAAGGACCGTGTTGACACTAAACAAATTATGCCTAGTGTGTCTTGGAAAAAAATTGGGGTCAAAACAAAAACTGTTACAGCCTAA 1434 0.4275 MAQLLSSSYSLTICSRNKPYLKPFKQCSTPFSIAVSCNNSKPSSRGFFLQEQKLRKHSLSVHAAAVSTSQETPVQTSSGNPFKPQRVMVIGGDGYCGWATALHLSNKGYEVAIVDSLVRRLFDHQLGLESLTPISSIQNRLHCWKSLTGKNIELYIGDICDFEFLSETFKTFEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVVGTLNVLFAIKEFREQCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETALHEELYNRFDYDGIFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVQCVELAIANPAKPGEFRVFNQFTEQFSVNQLAELVTKAGEKLGLDVKTIHVPNPRVEAEEHYYNCKNTKLVDLGLKPHFLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGVKTKTVTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03142 477 CDD SQD1_like_SDR_e 86 466 - -
Vimu6g03142 477 Gene3D - 86 377 - -
Vimu6g03142 477 Gene3D - 293 454 - -
Vimu6g03142 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 456 IPR036291 -
Vimu6g03142 477 Pfam NAD dependent epimerase/dehydratase family 87 374 IPR001509 -
Vimu6g03142 477 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 83 465 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03142 1 476 Acyl Lipid Metabolism Gene Families AT4G33030 78.542 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03142 K06118 - gmx:100816616 898.271