Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03129 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATCGGTAACTGCGAGGTTACTGTCGAGGCCACTCGTTTCACCTGTAACTCCGACTCAAACGCCGTCGTAATCTCGCTTCCCCGAAGCGGCAAGGTCAAAGTGTCAGTTGTTGAAAACCATGAGAACGCTTCTGAGGATTTTAGATCCGGTGATAAAGAGCATGAGTTCGTGCTGGTTAATCCTAAAGATGCTGATTCTGTTAGTAAATCCTACCTTCAGTTCTTTCTACAATTGGAGAGTGCTGTGCACGACTCATTGGGGCTTGGGTCCACTCTTTGTTGTAGTGATATTGAAGTATTACAAATGTACAGGACAGAGCTACCTGGAATGAATTATGCCGCAAATACTGGAAAACAATCCAAGTTTCTTGAGAGATGTGTTTTGTCTAGCAGGAAATACCGAACCCTACTGGTAAAATCCACTCGTGTTGGAAATTCTGGAAAGGTTATAGCCGCAATCACATACCAAATCATCCCTGCAGATACAGAATTTGCAGAGGTCCCACTTGCAGCTGTCAATGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTGGAGCTACGGAAAAGACTTCAAAGTGTTGGCATTCGTTCTATTTTATGCTGGGGAGACAAAGAATCAGAAGGGTTTTGGTTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACCAAAGGAAGGGCCCGCAGGTTACCTGTAAAAGCTGATATTCAGAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACGTAATGAAAGAATGCTTAGCCGATGAGGATAACACTACGAAGTGTCTCCCTTCACAGTTTCATCAGAATTCCTTTACACCTGCCCTTGCTGAAGATGAGCAGCTGAAGATTTCAGGATCTGACAGTCGTAACCCTAAGAAACTCTGTAGTAGTATTGCTCCATTTGCCCAAGTAAACGATGATAGACAAGCCACTGGTTCGGAAAGTTCACAGGATGGAGTTGGTGCTAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCGAAGAGGACCTGGGAAGCCTCTTTATCCTCATTAAAGTCAAAAAGAGTGAAGGGGAGCCAGCTGGTTGACAATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGCCAATCCCTGTTTTGTAGAGGCCCTCTACGATCCTTCGATTACAGATGGTTCTGAAAAATGTGTCGATAATAATTTACATGTTGAAGCTCCTATCAACATGGAACCTCCGTCTACTAAACAATGCTTTAGAATTATGTTGATGAATATCGCTGATGATGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTTGGTGGAACTGTATCCACTTGTGGAAGTATGACCACACACGTTGTCACAGGAAAAGAGTTATTGTTGACTACACAGTGCTTGGGTGATCTCATCAAGTTGGCAGATTTGTTGGTAAACTGGAGCAAACTTTTTTGTTCATATCCAATTATTATTATTATTATTATTATTCAGATAGCATACTCACTAATTTTTAAAATTGAATCTGCAGATGAACTGCCTCACATACTGAACGATACGGATTATTCGCTGAAGTACAAATGTGATTTAAAAAGTGCAGTTTTACGGGCAAAAGCTAGCTCTCATACATTGTTCAAGGGATATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCTAAAACATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTGATTAGTAGAGTGGAGAAAGTAAAAGAAACATCAACAACAATCTTTGTGACGGGCGAAGAAGACACGGAAGAAGCAATGGTAGCCGCAAAGAAAGGGATCCGAACTTTCAGTTGCGATTGGTTTATGAACTGTGTCATGAGACAAGAACTTGACTTGGAAGCCCCCCAGTTTGCTGAGACCTTATAA 1962 0.4164 MAPKRKPSSPISIGNCEVTVEATRFTCNSDSNAVVISLPRSGKVKVSVVENHENASEDFRSGDKEHEFVLVNPKDADSVSKSYLQFFLQLESAVHDSLGLGSTLCCSDIEVLQMYRTELPGMNYAANTGKQSKFLERCVLSSRKYRTLLVKSTRVGNSGKVIAAITYQIIPADTEFAEVPLAAVNAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWFKQGFVEIAQVDTKGRARRLPVKADIQKSLCFLGGSTLMVCHVMKECLADEDNTTKCLPSQFHQNSFTPALAEDEQLKISGSDSRNPKKLCSSIAPFAQVNDDRQATGSESSQDGVGANVNYCSQSTKGAKRTWEASLSSLKSKRVKGSQLVDNQSGSSCGFILETDEANPCFVEALYDPSITDGSEKCVDNNLHVEAPINMEPPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTVSTCGSMTTHVVTGKELLLTTQCLGDLIKLADLLVNWSKLFCSYPIIIIIIIIQIAYSLIFKIESADELPHILNDTDYSLKYKCDLKSAVLRAKASSHTLFKGYNICIAAHVQTPAKTLSAIVMSAGGNVISRVEKVKETSTTIFVTGEEDTEEAMVAAKKGIRTFSCDWFMNCVMRQELDLEAPQFAETL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03129 653 CDD NAT_SF 157 216 - -
Vimu6g03129 653 Pfam BRCA1 C Terminus (BRCT) domain 560 637 IPR001357 -
Vimu6g03129 653 SUPERFAMILY BRCT domain 557 643 IPR036420 -
Vimu6g03129 653 Gene3D - 107 251 - -
Vimu6g03129 653 ProSiteProfiles BRCT domain profile. 558 642 IPR001357 -
Vimu6g03129 653 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 66 254 - -
Vimu6g03129 653 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 157 237 IPR016181 -
Vimu6g03129 653 CDD BRCT_PAXIP1_rpt6_like 562 643 - -
Vimu6g03129 653 Gene3D BRCT domain 559 652 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03129 Vimu-Chr6 27665798 27671623 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03129 - - pvu:PHAVU_001G128100g 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03129 6 27665798 27671623 Vimu6g03129 6 27665798 27671623 ECH