Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03122 ATGGAAGCACAATCTGGAGTATGTTATGGAAGACTTGGTAACAACTTGCCATCCCCCACTGAAGTTGTGGCACTTTACAATCAAAACAACATTCGTAGAATGAGAATTTATGATCCAAATCAACAAGTTCTACAAGCTTTGAGTGGTTCCACTATTCAGCTTTTGTTAGACATTCCAAAGGAAAACCTCCAAAATCTAGCAGCTAGTCAAGACAATGCAAACAAATGGGTGCAAGACAACATTAAAAACTTTGCCAATGTCAGATTCAGATACATTGCAGTGGGAAATGAAGTGAAGCCTGAAGATTCATCTGCACAGTTTGTGGTGCCTGTAATGCAAAACATTCAAAATGCCATTTCTGTAGCAGGCCTCGGAAACCAAATAAAGGTTTCCACTGCCATTGAGTTTGGTGCCTTGGCAGAATCATTTCCTCCATCAAAAGGCTCCTTCAACACTAGTTATAGAGAAGCATATCTTGACGGTGTCATAAGATTTCTAGTGAACAATAACTCTCCATTATTGGTTAATGTTTACACTTATTTCAGTTACATAAACAACCCTACTGACATCAGTCTTGATTATGCACTTTTCACCTCTCCTTCGGTGGTGGTGAATGATGGTTCACTTGGTTATCAAAACCTTTTTGATGCTATGGTGGATGCTGCTTATTCTGCATTGGAGAAAGTAGGAGGTGGCTCAGTGAACATAGTTGTGTCTGAGAGTGGATGGCCCTCTTCTGGTGGCACTGCAACTTCACTTGACAATGCTAGAACTTACAACACAAACTTGGTTCAGCATGTCAAAAATGGAACCCCGAAAAGACCTGATAACCCTATTGAAACATATGTGTTTGCCATGTTTGATGAAAATCAGAAGCATCCAGATTATGAGAAATTCTGGGGGCTCTTCCGTCCAGATAAACAGCCCAAATACTCTATTAATTTGAATTAG 951 0.3996 MEAQSGVCYGRLGNNLPSPTEVVALYNQNNIRRMRIYDPNQQVLQALSGSTIQLLLDIPKENLQNLAASQDNANKWVQDNIKNFANVRFRYIAVGNEVKPEDSSAQFVVPVMQNIQNAISVAGLGNQIKVSTAIEFGALAESFPPSKGSFNTSYREAYLDGVIRFLVNNNSPLLVNVYTYFSYINNPTDISLDYALFTSPSVVVNDGSLGYQNLFDAMVDAAYSALEKVGGGSVNIVVSESGWPSSGGTATSLDNARTYNTNLVQHVKNGTPKRPDNPIETYVFAMFDENQKHPDYEKFWGLFRPDKQPKYSINLN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03122 316 Pfam Glycosyl hydrolases family 17 6 314 IPR000490 GO:0004553|GO:0005975
Vimu6g03122 316 Gene3D Glycosidases 5 316 - -
Vimu6g03122 316 ProSitePatterns Glycosyl hydrolases family 17 signature. 234 247 IPR000490 GO:0004553|GO:0005975
Vimu6g03122 316 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 314 IPR044965 GO:0004553|GO:0005975
Vimu6g03122 316 FunFam glucan endo-1,3-beta-glucosidase, basic 5 315 - -
Vimu6g03122 316 SUPERFAMILY (Trans)glycosidases 6 314 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03122 Vimu-Chr6 27586076 27588047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03122 3 315 Glycoside Hydrolase AT3G57270 61.076 2.48e-138 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03122 - - gmx:100776357 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03122 6 27586076 27588047 Vimu6g03122 6 27586076 27588047 ECH