Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03120 ATGTTGTGCTGTCTCAGCGAGTGGCACGGCGCGCCTCCGTTGTCTCATCAAAATGTCTCTTTTGCCTCGTCTTCGTGTTTTCGCCACCCCTTTACTTTCATCTTCTCTCCTCTCCTCCTTCTCTCAGCTGAAGCTTCAGATTTAGAATGTGATGTGACTCGTGATGATGTCAAAGCAGCAGAGAGAGCCAATGCACTTTGCATGGCTGTATCACAGCTTGCTAGTGAGTTTAGCAAGGAATCAATGTTGTCTCTGCAGAAGTTTTTTGGTGTACGCCGTGCTCGTGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCCCTGGGAATAGGAGGATTGCCAAAGGGTAGAATTGTGGAAATTTATGGACGGGAAGCAGCTGGGAAAACTACACTTGCTCTTCAAATTATTAGAGAAGCTCAAAAACTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCTCTGGACTTCTCACTTGTGGAATCGATAGGTGTAAATACTGAAAACCTTCTCGTATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCATCCCCAAATGCGAACTTGATCAATTAGGAGTTAGTCCTAAACGAGATTATCAATCACGAATGATGACTCAAGCACTACGGAAAATTCACTACTCATTATCTCACTCTCAAACTCTCATTATTTTCATTAATCAGATTAGATTGAGTTCAAAATCCGTCAAGGATCATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCTTTGAGATTCTATGCAGCCGTTCGTTTGAGACTTTCAAGAATAAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATCTGTGCGCAAGTGGTGAAAAATAAACTAGCACCAGCAGCAACAAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGATTTGGCCTGTGAACATGGAATCATTGTGAAAGACGAGGGGAGCTACATTATTGAGGGGGGGATTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATGATGCCATTTGTGACAAGTTGGTTAAGGATATGAGAAGACTTTATTTTTAA 1167 0.419 MLCCLSEWHGAPPLSHQNVSFASSSCFRHPFTFIFSPLLLLSAEASDLECDVTRDDVKAAERANALCMAVSQLASEFSKESMLSLQKFFGVRRARVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALQIIREAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKCELDQLGVSPKRDYQSRMMTQALRKIHYSLSHSQTLIIFINQIRLSSKSVKDHGSVEEVTCGGNALRFYAAVRLRLSRIRLIKTEDKVEGVLICAQVVKNKLAPAATKRAELGIKFGRGFCHESEVLDLACEHGIIVKDEGSYIIEGGIFDSREAAELFLAQNDAICDKLVKDMRRLYF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03120 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 317 IPR027417 -
Vimu6g03120 388 SMART AAA_5 115 295 IPR003593 GO:0016887
Vimu6g03120 388 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 PRINTS RecA protein signature 271 299 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 PRINTS RecA protein signature 151 180 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 PRINTS RecA protein signature 185 214 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 PRINTS RecA protein signature 223 252 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 Pfam recA bacterial DNA recombination protein 65 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 ProSitePatterns recA signature. 274 282 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vimu6g03120 388 ProSiteProfiles RecA family profile 1. 93 252 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vimu6g03120 388 CDD RecA 96 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 Gene3D - 92 385 IPR027417 -
Vimu6g03120 388 PANTHER RECA 49 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vimu6g03120 388 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03120 Vimu-Chr6 27565070 27570494 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03120 - - var:108318700 647.891