Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03116 ATGTCGTCTTCCGCCGCGCTCCATTTCCAATCTCCGATAGACTCCACGGAGGCGCCGCCGCATTCTTCCTTCCTTCATTTTAATGCTGATTGCTTAAACCCTTCCGTCTCCGCCGCGCGCACGAAGCCCCGGCCGAGGCTAGTCAAACTACGCAAGCAGTCTGCGTCTCAGCAGGCCAGGTCCCGGAACAGAACTGGCGCCGACGACGGTGGCGCTGGCTTCAATCCGTTTCGCGCCGATCAGGTAACCGGTAATGGTAGTATATTAGAGGGTGGTTTTTCGAACTCTCGCGGTGACGATGGTTTTGTGTTTGGCGCTGGGAAGGCTGAGTCTGACTCAGCTAGGGATTTGAAGGGGGGAATTAGGAGTGGTGGTTTGGAATTTGTGTTTGGTGCTGGGAAGAGTGACGAGGGATTGAAAAAGAACGGTGCGAGTGTAGCGGAGACGGTTTGTGGTGAGGGAGGGAAGGTGGGGTCAAATTCGGAGGGGGAGTTGAAGAGTAGGGTGTTTGTGTTTGGTGCTTCTACAAATAATTTGGATTCTGGCTTGAGTACAGAAAAGGGGAAATGTTCTGTCGGGTTGGGGGATTCGGGTGCGGAGAAGGAGTGTAAGTATGAATTTGAGTGTGGACAACGTGATTGCTTTGGGGGTAGCTATAGTGGTAGGGAGTCGAGTGTTAACGTGGAGAAGAAAGCGCCTGCTGGGTGTGGGTGGAATTCAGATGTTGGAATGGGTGCTTTTGGTGTCAAGATGGGAATGAATGCTAATAGTGACACAGATGCTGATTGGTATGATCATTTGGGCAAAGGTGTTAAGTGTAAGAGTGGATGTGGGAGTGCTAATGGTATTTCTGCTACTTCTGGTAGCGTTCCAGTGCGTAATTTATCAGATGAGATGGAGCAACTTAACATCAAACATTCTGAGGGTGCTGATATTACTAGGAATTCGAAGAATTCACATGCCAATGGTTGTACTGCTGGTTTTGTTTTTGGAGGAAATGACATGGGTTTTGGTTATTCTAGTGTTAGTTCAAAAACCAAAGCTGGTGGTCAGCAGTTCTGTGCCCATGCTGCTTCTGTGAATGTTGGCGTTCAAAATGGAACTGCTTGCGGTATTTCCTCTGATTCTACAGGAATACATTCTAAGCCATCCACTAGTCAGGAAGGCGTCACAGATTTCCAGAATGGCAAAAATCCAGGATGTTCTGTGTCTGAAGATTCGAAAGTGAATGGAGCTGCAGCGTCATTTTCCTTCTCATCATCTGGACTTGATTCCCATCCAAACTATGCTTCCATGCGCCATCCCTCAAGTGCAGATGGTGATAAGGGCGATAATTGTTTTGCAAGTACTCCAGAGGCATCCAAAGAATCTTTTGCTGACTTCAAACCCCCAATATGGGATCCTTCTTGTTTCAAAGATAACTTATTTCCAAAGTTGAATAGAAAAGTTGAGTCCACACAGAAGGGTCGATCATGTAAGGAAAAAGGAGCAAAATGTACAAGGCGAAAATCAAAGCTTCATTCTTTAAACAAGAAAGAGACAGGGCCAAATCATTTGTCAAAAGAAAACAGTTCACTCAAAACCCCTGAGTCTTCTGGTGTCCACTCACCAATGGATTTTTCTCCGTATCAGGAAACAACAGCAAGTGGTAAAGATGTAAATGCTTCTAAAGGATTAAATGATCTGCATTCAACAATTCCTACTGATTGTAAAGGTGAAAACTTGCCTACTATGGGGAGAGAAGATATGAGTACAACTGATAGAAGACATGGAGATCTGGATAATAATAAACGAGTTGAAAATTCGTCTGTTGACAATTCTCATTCTTCTGGCCCTGATATAGTCTGGCCTAATTTGAAAACTGAGCAATTCTGCGGTGGTAGTGCAGAAGGAGCTTCAGTTGGTGCTGGTGTTGACTTCACCTCAAACATTGAAAGGCAAAAGGATGATATTTTTCGTTTTGTTCCTGGTCTGAATGAATCTAATGGGAAAGATTTTTCGTTTTCTGCATCTTCAACTGTGGCTGGTACTCCATCAGTAAAGCGTCAACAGAAGAAGAAATTTAGGAGGAAAGGGGGGTGCAACTCTTTTGTTATCTCGCCTCATGTGAATGGAAAGTTTGTATCTTCTGGACAATTTTCACCACATAGCACTGCCAACATGTCATCAAATTCTGATGGGATGGATAGATCTCAGATAAATGGCTATTGCAAGGATGGGGATGTTGCATCATCAGAGGCAATTCCGTCATCAGCCTGTGACAAGTGGAGACTCAGGGGAAACCAGGCCTACAAAGATGGAGATCTTTCTAAAGCTGAGGGTTTCTACACACTAGGAATAAATTCTGTACCTTCAAGAGAAAGATCTGGATGCTCGCTTCAGCCTCTTTTACTATGCTATAGTAATCGTGCTGCAACACGAATGAGTCTTGGAAGAATTAGAGAGGCTCTAGAAGACTGCACGATGGCTACTGCTCTGGATCCTTCCTTTCCGAAAGTGCAGATGAGAACTGCTAGCTGCCACCTTTTGCTTGGGGAAGTAGAAAATGCTCAGCAGTGTTTTAATAAGTGCATGGAATCAGGTAGTGTTATTTGTTTGGATCGGAGGGTTATAGTTGAAGCAGCTGAAGGTTTACAAAAGGCTCAGGAAGTTCTCAAGTGTATAAACAATGCTGCCGAACTTTTAAAAGAGAGGACTTCTGATGCAGCTGCTACAGCGTTGGAACTAGCTTCTAAGGCATTGTCTATAAGTTTATACTCAGAAAAATTGCTGCAAATGAAGGCAGAGGCTCTATGTTTGCTACGAAAGTATGAAGCAGCAATTCAGCTTTGTGAACAAAGTCAGCATCTTGCAGAGAAAAATTTTGTCTTGGCAAACAATGCTCATGTTTCTGATAGTTCCTTGTGTGATAGTTACTCAGGTGTAAAATTGTGGAGGTGGTCATTGATATCCAAGTGTTACTTTCGTTTGGGAAGGCTTGAGGCATCACTTAATGTTCTAGAGCAATTACAGCATGCCGTGTCTGTCAGTGACAAGTGTGTGATTGATAATATTGAAGACTCATTATCATTAGCTTCTACAATAAGAGAACTTCTAGACCACAAGAGGGCAGGGAATGAAAACTTTAAAGTGGGAAAGTATACAGAAGCTATAGAGAATTACACTGCAGCTCTATCATGCAATATTAAATCATGTCCTTTTATGGCAATATGTTTCTGCAACCGTGCTGCTGCTCATCAAGCTTTGGGTCAAATTGCCGATGCAATTGCAGACTGTAGTGTGGCTATTGCTCTTGATGGAAGTTATGCAAAGGCAATTTCAAGAAGAGCCACCTTACTTGAGATGGTTAGAGATTATGAACAAGCATCTTGTGACCTTAAGAGACTTATAGCTGTTCTTGAAACTCAATCCAATGAAAGGGACAAACAGTCTGACTCACCCAATGGATCAAAAGGTGTGAAAGAATCAAGGCAAGCTCGTCAACGTCTTCTTTCAGTGGAGGATCAAGCCAAAAAGGGGACACCCTTGGATGTTTACCTCATTTTAGGAATCAAATCAGTTGATACAGCAACAGATATCAAAAAGGCATACCACAAGGCAGCTCTTAGACATCATCCGGACAAGGCTGGTCAGTTGTTGGCAAGAAATGAAGTTGGAGACGATGGCCAAGTTTGGAAGGAAATCTCACAGGAGGTGTACAAGGATGCTGATAAGCTTTTTAAAATGATTGGAGAAGCATATGCTGTGCTTTCAGACCCAACTAAGCGCTCGGAGTATGATTTGGAAGAGGATATAAGGAAAGCTTGTAAGTTAAATAATAGAGGTGACACAAGCAGGAGATCTTCAGATGCTTATGGGTTTGGAAGATCATGTGATGGTTACAAATCTTCCTCTGACAGAAATTCTAACAGACGAAACGGACGGGATCATTGGAAGACATATGGACATTCATATTCTCGATGGTAA 3966 0.4342 MSSSAALHFQSPIDSTEAPPHSSFLHFNADCLNPSVSAARTKPRPRLVKLRKQSASQQARSRNRTGADDGGAGFNPFRADQVTGNGSILEGGFSNSRGDDGFVFGAGKAESDSARDLKGGIRSGGLEFVFGAGKSDEGLKKNGASVAETVCGEGGKVGSNSEGELKSRVFVFGASTNNLDSGLSTEKGKCSVGLGDSGAEKECKYEFECGQRDCFGGSYSGRESSVNVEKKAPAGCGWNSDVGMGAFGVKMGMNANSDTDADWYDHLGKGVKCKSGCGSANGISATSGSVPVRNLSDEMEQLNIKHSEGADITRNSKNSHANGCTAGFVFGGNDMGFGYSSVSSKTKAGGQQFCAHAASVNVGVQNGTACGISSDSTGIHSKPSTSQEGVTDFQNGKNPGCSVSEDSKVNGAAASFSFSSSGLDSHPNYASMRHPSSADGDKGDNCFASTPEASKESFADFKPPIWDPSCFKDNLFPKLNRKVESTQKGRSCKEKGAKCTRRKSKLHSLNKKETGPNHLSKENSSLKTPESSGVHSPMDFSPYQETTASGKDVNASKGLNDLHSTIPTDCKGENLPTMGREDMSTTDRRHGDLDNNKRVENSSVDNSHSSGPDIVWPNLKTEQFCGGSAEGASVGAGVDFTSNIERQKDDIFRFVPGLNESNGKDFSFSASSTVAGTPSVKRQQKKKFRRKGGCNSFVISPHVNGKFVSSGQFSPHSTANMSSNSDGMDRSQINGYCKDGDVASSEAIPSSACDKWRLRGNQAYKDGDLSKAEGFYTLGINSVPSRERSGCSLQPLLLCYSNRAATRMSLGRIREALEDCTMATALDPSFPKVQMRTASCHLLLGEVENAQQCFNKCMESGSVICLDRRVIVEAAEGLQKAQEVLKCINNAAELLKERTSDAAATALELASKALSISLYSEKLLQMKAEALCLLRKYEAAIQLCEQSQHLAEKNFVLANNAHVSDSSLCDSYSGVKLWRWSLISKCYFRLGRLEASLNVLEQLQHAVSVSDKCVIDNIEDSLSLASTIRELLDHKRAGNENFKVGKYTEAIENYTAALSCNIKSCPFMAICFCNRAAAHQALGQIADAIADCSVAIALDGSYAKAISRRATLLEMVRDYEQASCDLKRLIAVLETQSNERDKQSDSPNGSKGVKESRQARQRLLSVEDQAKKGTPLDVYLILGIKSVDTATDIKKAYHKAALRHHPDKAGQLLARNEVGDDGQVWKEISQEVYKDADKLFKMIGEAYAVLSDPTKRSEYDLEEDIRKACKLNNRGDTSRRSSDAYGFGRSCDGYKSSSDRNSNRRNGRDHWKTYGHSYSRW 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03116 1321 Pfam DnaJ domain 1177 1260 IPR001623 -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 420 449 - -
Vimu6g03116 1321 SUPERFAMILY TPR-like 754 954 IPR011990 GO:0005515
Vimu6g03116 1321 Gene3D Tetratricopeptide repeat domain 1030 1152 IPR011990 GO:0005515
Vimu6g03116 1321 PRINTS DnaJ domain signature 1179 1197 IPR001623 -
Vimu6g03116 1321 PRINTS DnaJ domain signature 1235 1255 IPR001623 -
Vimu6g03116 1321 PRINTS DnaJ domain signature 1197 1212 IPR001623 -
Vimu6g03116 1321 Coils Coil 1119 1139 - -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 482 615 - -
Vimu6g03116 1321 SUPERFAMILY Chaperone J-domain 1159 1259 IPR036869 -
Vimu6g03116 1321 ProSitePatterns Nt-dnaJ domain signature. 1240 1259 IPR018253 -
Vimu6g03116 1321 Gene3D Tetratricopeptide repeat domain 753 1021 IPR011990 GO:0005515
Vimu6g03116 1321 SUPERFAMILY TPR-like 1034 1131 IPR011990 GO:0005515
Vimu6g03116 1321 SMART tpr_5 831 864 IPR019734 GO:0005515
Vimu6g03116 1321 SMART tpr_5 753 786 IPR019734 GO:0005515
Vimu6g03116 1321 SMART tpr_5 1103 1136 IPR019734 GO:0005515
Vimu6g03116 1321 SMART tpr_5 1069 1102 IPR019734 GO:0005515
Vimu6g03116 1321 SMART tpr_5 921 954 IPR019734 GO:0005515
Vimu6g03116 1321 SMART tpr_5 797 830 IPR019734 GO:0005515
Vimu6g03116 1321 SMART tpr_5 1031 1064 IPR019734 GO:0005515
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 377 404 - -
Vimu6g03116 1321 ProSiteProfiles dnaJ domain profile. 1177 1263 IPR001623 -
Vimu6g03116 1321 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 1321 - -
Vimu6g03116 1321 CDD DnaJ 1177 1252 IPR001623 -
Vimu6g03116 1321 Gene3D DnaJ domain 1163 1281 IPR036869 -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 35 93 - -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 519 563 - -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 582 601 - -
Vimu6g03116 1321 MobiDBLite consensus disorder prediction 1137 1160 - -
Vimu6g03116 1321 Coils Coil 878 898 - -
Vimu6g03116 1321 SMART dnaj_3 1176 1255 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03116 Vimu-Chr6 27512375 27520392 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03116 K09527 - gmx:100809278 1776.91