Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03068 ATGGCCACCACCGCAACTAACTGTCTCCAACTCGCCGGCGCCACCGTGTCCACTCACCGGAGAACTTCCATTTCCTGCAAGAAGAAATCGGATAAGATTGCATTCAAGGAAACGAAAGAAGGCTTCGTCGACTACGACCGAGGCCTGCACGAGGTCTCCACCAAAATCTCCGGCCTCCGCAAGGACAACATCGCCACCCGCTACCGCGTCCGCGTCGCCGGAAACCGCTTCCAGAAGGACTGGACAGTTTCCGAGGTCGCCGACCTCGTCCTCTCGCTCGACCTCTCCGACGACATCGATGGCCTACTCAACCGTTGGATAGGCCGCTTCGCACGCAAGAATTTCCCCTACCTCATTAAGGAGTTGACGCAGCGAGGGTCCATTGAACATTGTAATCGCGTGTTCAGGTGGATGAAGTTACAGAGGAACTACTGTGCGCGTAATGATATATACAACATGATGATTAGGTTGCACGCTCGTCACAACCGAACGGACCATGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCGGATGTTGAGACTTACAATGCTCTTATCAACGCACATGGTCGAGCTGGACAGTGGCGTTGGGCTTTGAATATCATGGATGACATGCTGCGTGCAGCTGTGTGTACTTTGCATTTTTCTTCCCTAGTCATATTTATAGATTGTAGAGAATATCTGTCCACCGTGCTGGCGTGGGAACCCTTAGGGTTTGTTCTGATACCACCGAGTAGGTATACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTCAGCGTTTGCAAGAAAATGACAGACAACGGTGTTGGGCCCGATCTTGTTACTCACAATATTATTCTGTCTGCATTTAAAAGTGGTGCTCAGTATTTGAAAGCTCTGTCATATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACCACACTTAATATTGTTATCCATTGTCTAGTAAAGCTTCAACAATATGACAAAGCTATTGATATTTTTAATTCCATGAGGGAGAAGAAATCAGAATGTACCCCTGATGTTGTTACATTCACAAGTATCATTCACTTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAAGCTGCATTTAATATGATGCTTGCAGAAGGGCTGAAACCTAATATAATCTCGTATAATGCACTGATAGGTGCATATGCTGCTTGTGGGATGGACAATGAGGCACTTTTGGTTTTCAATAAGATAAAAAAAAATGGTTTCCGCCCTGATGTTGTATCATATACGTCTCTCCTTAATGCTTATGGAAGGTCACAAAAACCCCAAAAAGCAAGGGAAATATTTAATATGATGAAGAAAAACAAGTTGAAGCCAAACCTTGTCAGTTACAATTCACTTATTGATGCCTATGGATCTAGTGGTTTTCTGACAGATGCAATTGAAGTCTTGCGAGAAATGGAACAAGATGGAATTCAACCAAATGTTGTTTCAATATGCATACTCTTGACTGCATGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAATCCTAACAGCTGCTAAGATGAGAGGAATTAAGTTAAACACAGTTGCATATAATTCAGCTATAGGAAGCTATATGAATGTAGGGGAATATGACAAAGCTATAGACTTGTACAAATCTATGACGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATTAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCTTCTGTCATATGTGCCTATAGCAAACAGGGCCAAATTGAAGAAGCAGAATCTACATTTGACTTGATGAAATCATCTGGTTGTTACCCTGATGTGGTTACATACACCTCAATGCTTGATGCTTACAATGCAGCTGGGAATTGGGAGAAAGCCTATGCACTCTTTGACGAAATGGAAGCAAGTGACATCAAGCTAGATACCATTGCCTGTGCAGCCCTAATGAGATCTTTTAATAAAGGTGGTCAACCGGGAAGGGTTCTTAGTCTAGCACAAAGCATGAGAGAAAAAGAAATTCCTTTCACTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGACATGATCAAGTACATAGAGCCTTCACTTCCTCTAATTTCATCCGGATGTTTGAATCAGTTGCTGCATGCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCGTCAGGTATTGATGTTAACTTAAACACTTACTCTATTTTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGACGCGGGCATTCATCCATCAAATGAAATGTTCCATGATATATCTTCGTTTTCACAAAAATGCTGTGGGCACGAAAATGCTTCTGTTATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCTGAGGATCAAATTTCTACCAGCCGACCAGGTCCAGGTCCAGCTGCTGCCGAAGTTCAGCCTCTGAGATTTTGTGAAGATTGA 2616 0.4174 MATTATNCLQLAGATVSTHRRTSISCKKKSDKIAFKETKEGFVDYDRGLHEVSTKISGLRKDNIATRYRVRVAGNRFQKDWTVSEVADLVLSLDLSDDIDGLLNRWIGRFARKNFPYLIKELTQRGSIEHCNRVFRWMKLQRNYCARNDIYNMMIRLHARHNRTDHARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWALNIMDDMLRAAVCTLHFSSLVIFIDCREYLSTVLAWEPLGFVLIPPSRYTYNNLINACGSSGNWKEALSVCKKMTDNGVGPDLVTHNIILSAFKSGAQYLKALSYFELMKGTHIRPDTTTLNIVIHCLVKLQQYDKAIDIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMLAEGLKPNIISYNALIGAYAACGMDNEALLVFNKIKKNGFRPDVVSYTSLLNAYGRSQKPQKAREIFNMMKKNKLKPNLVSYNSLIDAYGSSGFLTDAIEVLREMEQDGIQPNVVSICILLTACGRCSRKVKIDTILTAAKMRGIKLNTVAYNSAIGSYMNVGEYDKAIDLYKSMTKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEVYSSVICAYSKQGQIEEAESTFDLMKSSGCYPDVVTYTSMLDAYNAAGNWEKAYALFDEMEASDIKLDTIACAALMRSFNKGGQPGRVLSLAQSMREKEIPFTDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPLISSGCLNQLLHALGKSGKIETMLKLFFKMLASGIDVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNEMFHDISSFSQKCCGHENASVIKERLESLKRKSEDQISTSRPGPGPAAAEVQPLRFCED 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 230 348 IPR011990 GO:0005515
Vimu6g03068 871 Pfam PPR repeat 322 349 IPR002885 -
Vimu6g03068 871 MobiDBLite consensus disorder prediction 842 871 - -
Vimu6g03068 871 FunFam Pentatricopeptide repeat-containing protein isoform A 491 597 - -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Vimu6g03068 871 Pfam PPR repeat family 249 295 IPR002885 -
Vimu6g03068 871 Pfam PPR repeat family 604 647 IPR002885 -
Vimu6g03068 871 Pfam PPR repeat family 150 192 IPR002885 -
Vimu6g03068 871 Pfam PPR repeat family 531 579 IPR002885 -
Vimu6g03068 871 Pfam Pentatricopeptide repeat domain 354 402 IPR002885 -
Vimu6g03068 871 Pfam Pentatricopeptide repeat domain 479 508 IPR002885 -
Vimu6g03068 871 Pfam Pentatricopeptide repeat domain 764 811 IPR002885 -
Vimu6g03068 871 Pfam Pentatricopeptide repeat domain 414 473 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 418 489 IPR011990 GO:0005515
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 349 417 IPR011990 GO:0005515
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 599 669 IPR011990 GO:0005515
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 490 598 IPR011990 GO:0005515
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 150 183 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 393 427 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 568 598 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 322 353 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 533 566 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 463 497 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 604 637 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 638 672 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 251 284 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 185 211 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 358 392 IPR002885 -
Vimu6g03068 871 NCBIfam pentatricopeptide repeat 746 776 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Vimu6g03068 871 FunFam Os07g0213300 protein 296 410 - -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Vimu6g03068 871 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 117 216 - -
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 83 229 IPR011990 GO:0005515
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vimu6g03068 871 FunFam Pentatricopeptide repeat-containing protein At2g41720 684 859 - -
Vimu6g03068 871 SUPERFAMILY TPR-like 318 663 IPR011990 GO:0005515
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Vimu6g03068 871 Gene3D Tetratricopeptide repeat domain 682 853 IPR011990 GO:0005515
Vimu6g03068 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03068 444 816 Glycosyltransferase AT1G05670 24.538 1.02e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03068 - - gmx:100814643 1461.82